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ALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00526
Bact-VirALT_09252017_20_scaffold_10_prodigal-single.1__X__X__00526
Identity
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-59
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 56.0 | 4.98e-01 | 77.6% | 54.9% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 49.0 | 4.54e-01 | 77.6% | 52.1% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.76 | 60.0 | 4.73e-01 | 86.2% | 43.6% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.76 | 62.0 | 5.35e-01 | 94.8% | 58.2% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.75 | 57.0 | 3.86e-01 | 82.8% | 50.2% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.74 | 57.0 | 4.49e-01 | 82.8% | 42.4% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.74 | 61.0 | 5.31e-01 | 93.1% | 61.2% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.73 | 63.0 | 6.09e-01 | 94.8% | 84.6% |
| 3ns4A00 | 1.10.357.110 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus | 0.73 | 52.0 | 3.49e-01 | 74.1% | 21.5% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.73 | 52.0 | 3.88e-01 | 75.9% | 32.4% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 56.0 | 5.85e-01 | 86.2% | 96.2% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 53.0 | 4.87e-01 | 79.3% | 66.7% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.71 | 56.0 | 3.94e-01 | 86.2% | 35.4% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.71 | 51.0 | 3.51e-01 | 81.0% | 21.7% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 52.0 | 4.96e-01 | 79.3% | 68.2% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.70 | 60.0 | 4.14e-01 | 93.1% | 85.8% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 56.0 | 5.54e-01 | 87.9% | 88.5% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 48.0 | 5.11e-01 | 74.1% | 84.3% |
| 2c2aA01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.67 | 52.0 | 4.41e-01 | 81.0% | 95.6% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 55.0 | 4.05e-01 | 91.4% | 69.3% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 51.0 | 5.15e-01 | 91.4% | 81.4% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 51.0 | 4.48e-01 | 82.8% | 90.4% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.66 | 54.0 | 4.65e-01 | 91.4% | 64.1% |
| 5k3hB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.65 | 56.0 | 4.38e-01 | 98.3% | 76.7% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 53.0 | 4.77e-01 | 91.4% | 65.8% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.65 | 54.0 | 4.51e-01 | 89.7% | 56.2% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 45.0 | 4.31e-01 | 75.9% | 62.7% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 56.0 | 5.05e-01 | 93.1% | 88.3% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 48.0 | 4.60e-01 | 87.9% | 69.2% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.64 | 50.0 | 4.93e-01 | 86.2% | 81.0% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 47.0 | 4.28e-01 | 86.2% | 59.3% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.63 | 45.0 | 4.07e-01 | 84.5% | 53.6% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 53.0 | 4.36e-01 | 93.1% | 53.9% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 43.0 | 3.87e-01 | 79.3% | 53.2% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 52.0 | 5.06e-01 | 98.3% | 84.6% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.11e-01 | 84.5% | 66.7% |
| 5jnmA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 50.0 | 3.60e-01 | 93.1% | 31.6% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 43.0 | 3.90e-01 | 81.0% | 52.9% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.60 | 47.0 | 4.56e-01 | 84.5% | 76.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 46.0 | 4.43e-01 | 84.5% | 98.5% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 53.0 | 4.74e-01 | 100.0% | 70.4% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 49.0 | 4.84e-01 | 100.0% | 87.1% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 52.0 | 5.11e-01 | 100.0% | 92.1% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 49.0 | 3.93e-01 | 100.0% | 56.9% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.54 | 42.0 | 3.87e-01 | 94.8% | 71.3% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.52 | 43.0 | 3.66e-01 | 89.7% | 57.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3501367 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.88 | 72.0 | 6.40e-01 | 89.7% | 64.6% |
| 4027517 | 109.3.1.165 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 | 0.83 | 75.0 | 4.55e-01 | 100.0% | 32.4% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.82 | 69.0 | 6.05e-01 | 94.8% | 63.5% |
| 4541657 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.81 | 73.0 | 6.54e-01 | 100.0% | 72.5% |
| 4038778 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.80 | 59.0 | 4.62e-01 | 79.3% | 39.1% |
| 4003051 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.79 | 64.0 | 6.24e-01 | 91.4% | 81.5% |
| 4012566 | 633.24.1.3 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF6594 | 0.79 | 60.0 | 5.49e-01 | 86.2% | 62.7% |
| 3589232 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 60.0 | 3.53e-01 | 81.0% | 11.2% |
| 4465072 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.79 | 59.0 | 4.62e-01 | 81.0% | 40.0% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.78 | 68.0 | 4.98e-01 | 100.0% | 36.8% |
| 4463205 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.77 | 58.0 | 3.36e-01 | 79.3% | 10.6% |
| 3684989 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.76 | 56.0 | 4.25e-01 | 81.0% | 32.9% |
| 3993361 | 622.4.1.41 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF7753 | 0.76 | 64.0 | 6.29e-01 | 100.0% | 89.2% |
| 1877692 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.76 | 58.0 | 6.24e-01 | 89.7% | 100.0% |
| 4940986 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.75 | 66.0 | 5.64e-01 | 100.0% | 77.9% |
| 4353218 | 605.1.1.167 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PKK | 0.74 | 64.0 | 5.91e-01 | 100.0% | 76.0% |
| 3822 | 604.4.1.1 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › AHSP | 0.73 | 59.0 | 5.13e-01 | 89.7% | 62.2% |
| 185993 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.72 | 58.0 | 5.76e-01 | 91.4% | 86.9% |
| 4631580 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.71 | 59.0 | 4.18e-01 | 100.0% | 29.0% |
| 4951918 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.70 | 61.0 | 5.23e-01 | 100.0% | 70.5% |
| 3704884 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 60.0 | 3.98e-01 | 93.1% | 25.8% |
| 3174635 | 4207.1.1.102 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF29925 | 0.70 | 61.0 | 5.28e-01 | 96.6% | 66.7% |
| 3839497 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.69 | 52.0 | 4.59e-01 | 81.0% | 61.2% |
| 3165232 | 1078.1.1.0 ↗ | extended segments › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit › Bd-type quinol oxidase transmembrane helix subunit | 0.69 | 49.0 | 5.40e-01 | 77.6% | 97.8% |
| 3988812 | 614.1.1.27 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › DDE_Tnp_1 | 0.69 | 56.0 | 5.05e-01 | 91.4% | 65.0% |
| 4257141 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.69 | 61.0 | 4.16e-01 | 98.3% | 29.5% |
| 3399070 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.67 | 48.0 | 4.98e-01 | 82.8% | 80.0% |
| 4964387 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.66 | 58.0 | 4.88e-01 | 100.0% | 74.0% |
| 2141223 | 5055.1.1.1 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › CaMBD | 0.66 | 51.0 | 4.29e-01 | 84.5% | 50.5% |
| 5017842 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.66 | 56.0 | 5.03e-01 | 98.3% | 68.2% |
| 3939577 | 7516.1.1.33 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › DUF273 | 0.66 | 57.0 | 3.91e-01 | 100.0% | 26.5% |
| 3303117 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.65 | 53.0 | 4.73e-01 | 91.4% | 74.1% |
| 3193842 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.64 | 52.0 | 4.11e-01 | 91.4% | 70.4% |
| 4354962 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.63 | 47.0 | 4.99e-01 | 77.6% | 90.0% |
| 3629808 | 3291.1.1.130 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHDCT2 | 0.63 | 54.0 | 4.54e-01 | 91.4% | 58.9% |
| 4610474 | 547.1.1.0 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain | 0.62 | 51.0 | 3.43e-01 | 100.0% | 29.4% |
| 4854416 | 5071.1.1.1 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › UCR_hinge | 0.62 | 46.0 | 4.51e-01 | 82.8% | 100.0% |
| 4940728 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.60 | 47.0 | 4.99e-01 | 84.5% | 98.0% |
| 3430567 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 43.0 | 4.32e-01 | 86.2% | 76.7% |
| 5017220 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 43.0 | 4.21e-01 | 82.8% | 75.4% |
D2
high
residues 73-135
Domain cluster:
rep: BML_coassembly_scaffold_25_prodigal-single.1__X__X__00183__D213-277
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05443.18 best | ROS_MUCR | 107.7 | 5.70e-31 | 100.0% | 51.2% |
D3
medium
residues 194-264
Domain cluster:
rep: BML_coassembly_scaffold_25_prodigal-single.1__X__X__00183__D213-277
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05443.18 best | ROS_MUCR | 60.4 | 2.50e-16 | 84.5% | 42.3% |