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ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00107
Bact-VirALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00107
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-149
Domain cluster:
rep: DNA_topoisomerase_2__YP_009162467__Salmon_gill_poxvirus__1680908__D669-796
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00521.27 best | DNA_topoisoIV | 60.2 | 2.50e-16 | 88.0% | 23.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bjtA05 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.91 | 87.0 | 6.53e-01 | 100.0% | 52.6% |
| 2xcqA02 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.90 | 86.0 | 6.30e-01 | 100.0% | 48.3% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.71 | 49.0 | 3.93e-01 | 98.3% | 36.9% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 50.0 | 5.60e-01 | 88.9% | 94.4% |
| 2doaA00 | 1.10.10.2670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase | 0.70 | 43.0 | 4.50e-01 | 82.1% | 67.3% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 43.0 | 5.20e-01 | 77.8% | 98.6% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 50.0 | 5.49e-01 | 85.5% | 95.7% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 50.0 | 5.23e-01 | 82.1% | 83.8% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 49.0 | 5.34e-01 | 82.9% | 91.7% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 44.0 | 5.11e-01 | 72.6% | 95.1% |
| 3gz5B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 39.0 | 4.81e-01 | 93.2% | 93.2% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 5.10e-01 | 82.9% | 89.3% |
| 2rkhA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 45.0 | 5.04e-01 | 87.2% | 100.0% |
| 2fokB01 | 3.90.241.10 | Alpha Beta › Alpha-Beta Complex › FokI Restriction Endonuclease; Chain A, domain 1 › Foki Restriction Endonuclease, Chain A, domain 1 | 0.55 | 49.0 | 3.68e-01 | 97.4% | 48.4% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1165372 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.93 | 75.0 | 7.03e-01 | 82.9% | 76.8% |
| 3594651 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.92 | 86.0 | 8.23e-01 | 96.6% | 96.9% |
| 3096548 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.92 | 85.0 | 8.13e-01 | 96.6% | 97.7% |
| 4096086 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.92 | 70.0 | 7.40e-01 | 77.8% | 92.4% |
| 4969077 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.91 | 82.0 | 7.42e-01 | 93.2% | 80.7% |
| 4238706 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.91 | 85.0 | 6.05e-01 | 97.4% | 43.6% |
| 3768919 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.91 | 85.0 | 6.02e-01 | 96.6% | 93.3% |
| 4024262 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.91 | 82.0 | 7.33e-01 | 94.0% | 79.4% |
| 2754385 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.91 | 84.0 | 7.39e-01 | 96.6% | 78.8% |
| 4370976 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.90 | 81.0 | 7.20e-01 | 93.2% | 77.4% |
| 4887989 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.90 | 85.0 | 7.29e-01 | 100.0% | 72.4% |
| 4865162 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.87 | 73.0 | 7.01e-01 | 88.0% | 84.0% |
| 4946211 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.85 | 79.0 | 7.16e-01 | 96.6% | 79.3% |
| 4056628 | 101.1.2.162 ↗ | alpha arrays › HTH › HTH › winged helix domain › DprA_WH | 0.83 | 43.0 | 5.54e-01 | 71.8% | 86.8% |
| 3670440 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.79 | 57.0 | 6.44e-01 | 82.9% | 96.7% |
| 4961853 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.78 | 48.0 | 5.78e-01 | 73.5% | 94.7% |
| 5065682 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 46.0 | 4.49e-01 | 74.4% | 53.8% |
| 4109720 | 101.1.2.404 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF505 | 0.77 | 55.0 | 6.16e-01 | 92.3% | 95.6% |
| 4996074 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 47.0 | 5.54e-01 | 97.4% | 91.3% |
| 5030817 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.75 | 46.0 | 4.47e-01 | 71.8% | 55.4% |
| 4943320 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 49.0 | 4.93e-01 | 76.1% | 65.0% |
| 4009179 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 48.0 | 5.36e-01 | 76.1% | 83.3% |
| 4963411 | 101.1.2.938 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25947 | 0.75 | 42.0 | 5.21e-01 | 97.4% | 91.4% |
| 4593646 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 52.0 | 5.88e-01 | 94.9% | 93.3% |
| 3502186 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 49.0 | 5.58e-01 | 70.1% | 87.6% |
| 3935353 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 43.0 | 5.03e-01 | 70.9% | 80.7% |
| 5075222 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 47.0 | 5.48e-01 | 97.4% | 92.5% |
| 3652603 | 101.1.2.516 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25895 | 0.74 | 49.0 | 5.10e-01 | 88.0% | 71.8% |
| 5000830 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 50.0 | 5.58e-01 | 88.0% | 88.9% |
| 3428027 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.74 | 55.0 | 5.21e-01 | 83.8% | 66.7% |
| 3459794 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.74 | 55.0 | 5.95e-01 | 83.8% | 91.0% |
| 3464139 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.73 | 57.0 | 5.81e-01 | 84.6% | 82.6% |
| 4977905 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 41.0 | 5.10e-01 | 70.1% | 91.4% |
| 3420624 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.73 | 54.0 | 5.68e-01 | 82.1% | 84.8% |
| 4979487 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 50.0 | 4.69e-01 | 83.8% | 57.9% |
| 3444653 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.73 | 57.0 | 5.63e-01 | 85.5% | 76.8% |
| 3297063 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 55.0 | 5.88e-01 | 85.5% | 91.0% |
| 3423732 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 56.0 | 6.01e-01 | 84.6% | 93.0% |
| 5000571 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.72 | 46.0 | 5.37e-01 | 74.4% | 92.5% |
| 3447799 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.72 | 59.0 | 5.67e-01 | 90.6% | 76.9% |
| 4997662 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 50.0 | 5.15e-01 | 92.3% | 74.5% |
| 5028531 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 45.0 | 5.07e-01 | 74.4% | 82.2% |
| 5083602 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 45.0 | 4.82e-01 | 72.6% | 73.0% |
| 4994794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 45.0 | 5.50e-01 | 72.6% | 100.0% |
| 4251909 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.71 | 49.0 | 5.60e-01 | 81.2% | 96.5% |
| 3282607 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 50.0 | 4.88e-01 | 85.5% | 67.2% |
| 4934055 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.71 | 48.0 | 5.60e-01 | 93.2% | 100.0% |
| 3441608 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.71 | 52.0 | 5.89e-01 | 80.3% | 100.0% |
| 3426878 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.71 | 53.0 | 5.77e-01 | 82.1% | 92.0% |
| 3372061 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.70 | 53.0 | 4.94e-01 | 77.8% | 78.6% |
| 4999546 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.70 | 51.0 | 5.58e-01 | 84.6% | 93.7% |
| 3435414 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.69 | 55.0 | 5.60e-01 | 83.8% | 91.3% |
| 3423032 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.69 | 59.0 | 5.50e-01 | 89.7% | 85.0% |
| 5073138 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 50.0 | 5.10e-01 | 97.4% | 76.5% |
| 3809863 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 58.0 | 5.33e-01 | 89.7% | 84.0% |
| 3479163 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 58.0 | 5.62e-01 | 89.7% | 83.8% |
| 3420789 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.68 | 53.0 | 5.32e-01 | 81.2% | 94.2% |
| 3587554 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.68 | 49.0 | 5.27e-01 | 85.5% | 87.0% |
| 4963412 | 101.1.2.938 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25947 | 0.68 | 45.0 | 5.25e-01 | 72.6% | 92.9% |
| 3434805 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.68 | 53.0 | 5.61e-01 | 82.1% | 92.4% |
| 3645708 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.67 | 56.0 | 5.73e-01 | 88.0% | 96.5% |
| 3821352 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.67 | 54.0 | 5.26e-01 | 83.8% | 83.2% |
| 3806096 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.67 | 57.0 | 5.51e-01 | 89.7% | 92.3% |
| 3439642 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 56.0 | 5.28e-01 | 89.7% | 74.3% |
| 5076211 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 44.0 | 4.51e-01 | 77.8% | 70.0% |
| 3519118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 40.0 | 4.72e-01 | 88.0% | 92.0% |
| 3666925 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.66 | 56.0 | 5.49e-01 | 89.7% | 87.2% |
| 3450793 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.66 | 55.0 | 5.19e-01 | 88.9% | 84.3% |
| 4999504 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 52.0 | 5.20e-01 | 94.9% | 81.7% |
| 5074949 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 48.0 | 5.29e-01 | 86.3% | 98.9% |
| 5065230 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 46.0 | 3.52e-01 | 96.6% | 34.7% |
| 3441136 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.64 | 54.0 | 4.63e-01 | 88.9% | 72.2% |
| 5035276 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 4.96e-01 | 79.5% | 93.3% |
| 3676524 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.64 | 55.0 | 5.28e-01 | 89.7% | 92.3% |
| 1907246 | 101.1.2.212 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cac1_C | 0.64 | 39.0 | 4.60e-01 | 97.4% | 87.7% |
| 4950213 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 45.0 | 4.83e-01 | 88.0% | 84.0% |
| 2494143 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.64 | 48.0 | 4.92e-01 | 82.9% | 82.9% |
| 4640108 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.64 | 45.0 | 4.70e-01 | 72.6% | 100.0% |
| 5014345 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.62 | 44.0 | 4.94e-01 | 77.8% | 97.8% |
| 3440580 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.61 | 51.0 | 4.88e-01 | 89.7% | 77.0% |
| 3349988 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.60 | 47.0 | 4.92e-01 | 88.9% | 90.5% |
| 5000260 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 53.0 | 4.73e-01 | 98.3% | 73.8% |