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ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00145
Bact-VirALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00145
Identity
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-90
Domain cluster:
rep: RTP_09252017_15_scaffold_29_prodigal-single.1__X__X__00409__D8-87
D2
high
residues 95-161
Domain cluster:
rep: Mad1_20_16_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00222__D3-59
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1icwB00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 48.0 | 4.88e-01 | 71.6% | 71.2% |
| 3icaB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.65 | 50.0 | 3.55e-01 | 83.6% | 100.0% |
| 3qszA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 49.0 | 3.75e-01 | 91.0% | 76.8% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 46.0 | 3.06e-01 | 82.1% | 53.0% |
| 2wqlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 50.0 | 3.86e-01 | 91.0% | 81.6% |
| 4v1ag00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 51.0 | 4.05e-01 | 97.0% | 45.9% |
| 3ebkB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 52.0 | 3.96e-01 | 98.5% | 58.5% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 47.0 | 2.94e-01 | 85.1% | 64.7% |
| 3deeA02 | 3.90.930.50 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.60 | 41.0 | 3.52e-01 | 71.6% | 61.4% |
| 2vneA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 48.0 | 3.79e-01 | 95.5% | 79.8% |
| 1u5qA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 37.0 | 3.32e-01 | 71.6% | 43.8% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 41.0 | 3.31e-01 | 74.6% | 54.0% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 46.0 | 4.52e-01 | 85.1% | 85.9% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 47.0 | 3.81e-01 | 94.0% | 83.4% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 48.0 | 4.93e-01 | 91.0% | 96.8% |
| 1aj6A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.58 | 43.0 | 3.17e-01 | 80.6% | 65.5% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 44.0 | 2.98e-01 | 80.6% | 38.0% |
| 7tzoA01 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.58 | 42.0 | 3.26e-01 | 82.1% | 96.6% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 4.41e-01 | 85.1% | 86.1% |
| 3oxhA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 37.0 | 3.07e-01 | 73.1% | 32.8% |
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.57 | 48.0 | 4.33e-01 | 95.5% | 99.0% |
| 3ijtB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 46.0 | 3.67e-01 | 91.0% | 77.6% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 47.0 | 3.72e-01 | 100.0% | 82.4% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 45.0 | 3.54e-01 | 91.0% | 80.0% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 47.0 | 3.65e-01 | 95.5% | 80.9% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 38.0 | 3.30e-01 | 79.1% | 41.2% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 47.0 | 3.17e-01 | 97.0% | 27.1% |
| 1kllA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 38.0 | 3.20e-01 | 79.1% | 37.5% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 4.11e-01 | 86.6% | 80.5% |
| 7b9cA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 42.0 | 2.71e-01 | 83.6% | 46.5% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 47.0 | 3.69e-01 | 97.0% | 77.1% |
| 3f2kB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 40.0 | 2.92e-01 | 76.1% | 47.0% |
| 3oxhA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 36.0 | 3.16e-01 | 74.6% | 39.5% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.55 | 44.0 | 3.86e-01 | 88.1% | 78.8% |
| 8adlB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 48.0 | 3.10e-01 | 98.5% | 95.9% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.95e-01 | 94.0% | 83.6% |
| 3a7fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 35.0 | 3.26e-01 | 74.6% | 48.4% |
| 2k0mA00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 43.0 | 3.72e-01 | 86.6% | 71.2% |
| 3t0qA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.54 | 45.0 | 2.99e-01 | 94.0% | 93.1% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 3.68e-01 | 91.0% | 54.6% |
| 5ighA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 38.0 | 3.52e-01 | 74.6% | 97.7% |
| 3c96A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 41.0 | 3.09e-01 | 83.6% | 45.8% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 3.94e-01 | 77.6% | 93.5% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 39.0 | 4.00e-01 | 80.6% | 83.6% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 42.0 | 3.37e-01 | 94.0% | 79.2% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.52 | 45.0 | 3.33e-01 | 100.0% | 37.6% |
| 3ayjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 45.0 | 2.84e-01 | 100.0% | 82.1% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 41.0 | 4.28e-01 | 95.5% | 98.4% |
| 4k7zA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 2.98e-01 | 92.5% | 89.7% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 4.11e-01 | 94.0% | 86.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030767 | 3504.1.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 | 0.71 | 62.0 | 5.11e-01 | 97.0% | 95.8% |
| 3273263 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.67 | 54.0 | 3.27e-01 | 86.6% | 24.3% |
| None | — | 0.66 | 56.0 | 3.18e-01 | 91.0% | 12.9% | |
| 3591463 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.66 | 45.0 | 3.74e-01 | 70.1% | 44.3% |
| 3570692 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.66 | 45.0 | 3.75e-01 | 70.1% | 43.5% |
| 3272228 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 51.0 | 3.30e-01 | 83.6% | 24.9% |
| 3520868 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 44.0 | 3.50e-01 | 70.1% | 40.7% |
| 3533115 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.65 | 45.0 | 3.41e-01 | 73.1% | 53.1% |
| 3704939 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 44.0 | 3.98e-01 | 70.1% | 55.6% |
| 3515664 | 5.1.4.34 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 | 0.64 | 50.0 | 2.94e-01 | 83.6% | 17.9% |
| 3903728 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 43.0 | 3.77e-01 | 70.1% | 50.0% |
| 3263649 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 42.0 | 3.42e-01 | 70.1% | 39.2% |
| 3750640 | 220.1.1.38 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N | 0.60 | 45.0 | 3.83e-01 | 80.6% | 71.8% |
| 4002646 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 48.0 | 3.23e-01 | 89.6% | 48.1% |
| 3519934 | 5.1.4.48 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 | 0.59 | 50.0 | 3.45e-01 | 94.0% | 32.6% |
| 3233381 | 5.1.4.47 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N | 0.59 | 47.0 | 2.97e-01 | 86.6% | 20.3% |
| 3964241 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.59 | 40.0 | 4.01e-01 | 71.6% | 68.6% |
| 3174832 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 46.0 | 2.65e-01 | 86.6% | 11.9% |
| 3639196 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.58 | 41.0 | 4.56e-01 | 73.1% | 100.0% |
| 5029920 | 4100.1.1.3 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox | 0.58 | 37.0 | 3.75e-01 | 70.1% | 66.2% |
| 3209968 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.58 | 45.0 | 2.77e-01 | 83.6% | 15.6% |
| 4632722 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.56 | 43.0 | 2.93e-01 | 83.6% | 55.7% |
| 3931076 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.56 | 43.0 | 3.60e-01 | 83.6% | 75.8% |
| 370870 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 46.0 | 3.76e-01 | 95.5% | 84.7% |
| 5053926 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 45.0 | 4.20e-01 | 89.6% | 71.2% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.56 | 44.0 | 4.52e-01 | 86.6% | 95.3% |
| 3967545 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.55 | 38.0 | 2.94e-01 | 73.1% | 93.1% |
| 3597255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 42.0 | 3.93e-01 | 83.6% | 70.6% |
| 3929340 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 45.0 | 3.56e-01 | 92.5% | 87.6% |
| 3377637 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 42.0 | 2.86e-01 | 86.6% | 38.1% |
| 3716690 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.54 | 43.0 | 3.90e-01 | 88.1% | 93.7% |
| 3472026 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.54 | 44.0 | 3.74e-01 | 92.5% | 68.3% |
| 3924545 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.52 | 43.0 | 3.67e-01 | 97.0% | 84.2% |
| 3718563 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.52 | 37.0 | 3.87e-01 | 74.6% | 90.0% |
| 3252821 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 40.0 | 3.41e-01 | 86.6% | 71.8% |