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ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00153

Bact-Vir

ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00153

Identity

Kingdom:
phage

Quality

88.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-96
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.75 60.0 6.43e-01 94.6% 97.5%
4g68A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.69 63.0 4.91e-01 98.9% 92.0%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.67 47.0 4.52e-01 79.6% 63.9%
2fltA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.66 54.0 5.01e-01 89.2% 81.2%
4o89A02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.65 48.0 4.88e-01 95.7% 77.7%
4pe3A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.63 56.0 3.91e-01 100.0% 81.9%
3thiA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 56.0 4.54e-01 98.9% 100.0%
4u5pA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.62 51.0 4.53e-01 91.4% 70.0%
4nf0A00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.62 56.0 3.92e-01 100.0% 87.6%
1sbpA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 54.0 4.61e-01 100.0% 98.7%
2fa8B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 41.0 4.24e-01 83.9% 75.9%
4c1uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 53.0 4.23e-01 98.9% 90.3%
5k2xA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 53.0 3.45e-01 100.0% 82.1%
2pfyA00 3.40.190.170 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 0.60 52.0 3.66e-01 97.8% 86.4%
4m1aA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.59 49.0 4.69e-01 91.4% 79.4%
2npbA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 40.0 4.17e-01 87.1% 76.1%
3myuA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.58 49.0 4.21e-01 92.5% 84.6%
4r6hA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 50.0 4.22e-01 96.8% 96.9%
2btoB02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.58 37.0 3.60e-01 71.0% 57.7%
2es7A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 41.0 4.00e-01 87.1% 68.0%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 41.0 3.53e-01 87.1% 48.0%
2in3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 38.0 4.00e-01 83.9% 79.0%
3czcA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 45.0 4.51e-01 89.2% 86.0%
3ec3A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 43.0 4.00e-01 84.9% 70.6%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 39.0 4.06e-01 83.9% 80.0%
1r5pB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 4.33e-01 93.5% 86.0%
2k18A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.89e-01 83.9% 68.3%
7vw6B02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 36.0 4.00e-01 83.9% 90.0%
2i0fA00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.54 46.0 4.03e-01 96.8% 76.9%
4nwyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 3.78e-01 84.9% 64.1%
1tvmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 42.0 4.21e-01 91.4% 83.9%
2pptA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 3.82e-01 87.1% 70.8%
1e2yF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 3.46e-01 83.9% 72.0%
2r2jA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.64e-01 89.2% 57.6%
7p8na01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 37.0 3.88e-01 86.0% 83.1%
4ru1A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 42.0 3.72e-01 89.2% 77.1%
4j56E00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.71e-01 83.9% 69.5%
4efaE02 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.52 37.0 3.38e-01 86.0% 55.0%
5epfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.53e-01 89.2% 72.1%
3gkmA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 41.0 3.50e-01 89.2% 73.9%
2b5eA04 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 39.0 3.42e-01 82.8% 72.1%
1n8jA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 38.0 3.14e-01 83.9% 61.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945722 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.77 59.0 6.53e-01 91.4% 100.0%
4937 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.75 60.0 6.43e-01 94.6% 97.5%
4059350 315.2.1.1 a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI 0.75 57.0 6.25e-01 92.5% 100.0%
3617823 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.67 52.0 5.26e-01 94.6% 82.8%
5041554 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.66 50.0 4.98e-01 92.5% 77.9%
4932490 301.6.1.2 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C 0.66 40.0 3.27e-01 79.6% 32.6%
4995255 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.63 48.0 4.72e-01 92.5% 75.0%
4969667 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.63 49.0 4.78e-01 92.5% 75.2%
5048799 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.62 49.0 4.83e-01 92.5% 79.0%
4045612 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.62 47.0 4.66e-01 92.5% 76.0%
2125196 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.62 45.0 4.50e-01 92.5% 73.7%
4376550 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.62 47.0 4.72e-01 92.5% 80.0%
3587657 7523.1.1.28 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_8 0.61 54.0 4.25e-01 100.0% 89.2%
4888978 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.60 48.0 4.62e-01 92.5% 75.5%
4927197 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.60 46.0 4.55e-01 92.5% 77.0%
162597 2485.1.1.34 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.59 40.0 4.17e-01 87.1% 76.1%
4030524 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 41.0 4.09e-01 87.1% 71.6%
3715712 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.58 47.0 4.58e-01 92.5% 78.1%
5073979 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.58 46.0 4.40e-01 92.5% 73.6%
2645888 7510.1.1.0 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.57 33.0 3.35e-01 84.9% 55.3%
4972318 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 42.0 4.26e-01 88.2% 77.4%
5065181 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 40.0 4.18e-01 87.1% 81.2%
4962669 2485.1.1.20 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like 0.56 40.0 4.31e-01 88.2% 88.7%
3400103 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 45.0 4.12e-01 92.5% 68.3%
4610047 3585.1.1.0 a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain 0.55 39.0 4.22e-01 88.2% 93.3%
1018905 2485.1.1.27 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB 0.54 42.0 4.30e-01 88.2% 85.7%
2674778 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.54 42.0 3.35e-01 82.8% 75.5%
3785704 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 45.0 3.72e-01 90.3% 67.3%
3592522 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 38.0 3.50e-01 86.0% 55.2%
4111152 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.54 36.0 2.93e-01 90.3% 36.0%
5071961 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 36.0 3.79e-01 88.2% 76.5%
3866779 2485.1.1.34 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.54 38.0 3.90e-01 87.1% 77.3%
3420247 298.4.1.4 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › OSCP 0.54 36.0 3.71e-01 86.0% 71.1%
4946588 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.53 40.0 3.72e-01 78.5% 100.0%
4052320 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 45.0 3.75e-01 95.7% 82.4%
3261678 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.53 42.0 3.81e-01 84.9% 66.4%
3999455 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 40.0 3.62e-01 82.8% 78.5%
3832789 2485.1.1.34 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.52 38.0 3.95e-01 92.5% 84.1%
5076938 2485.1.1.38 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.51 40.0 4.01e-01 87.1% 82.1%
2983383 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 34.0 3.62e-01 87.1% 76.2%
3784600 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 43.0 3.94e-01 92.5% 70.8%
3314588 2485.1.1.43 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_6 0.51 40.0 3.74e-01 90.3% 66.7%
4963846 2485.1.1.167 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › HTH_63 0.51 39.0 3.47e-01 83.9% 96.4%
3410170 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 38.0 3.44e-01 80.6% 58.5%
3218188 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 40.0 3.66e-01 86.0% 74.4%
4953332 2485.1.1.38 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.51 40.0 4.16e-01 88.2% 91.8%
4026233 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 41.0 3.82e-01 88.2% 73.0%
3247932 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 39.0 3.73e-01 83.9% 77.3%
3727825 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 39.0 3.76e-01 88.2% 71.8%
3680341 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 36.0 3.34e-01 78.5% 76.9%
3453594 2485.1.1.19 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.50 36.0 3.67e-01 83.9% 75.8%
3706117 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 37.0 3.55e-01 88.2% 66.1%