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ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00161
Bact-VirALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00161
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 45.0 | 4.59e-01 | 100.0% | 83.3% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 41.0 | 3.59e-01 | 92.6% | 44.4% |
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 41.0 | 3.66e-01 | 92.6% | 48.0% |
| 1faoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 40.0 | 3.62e-01 | 92.6% | 48.0% |
| 4gzuA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 40.0 | 3.24e-01 | 92.6% | 32.7% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 39.0 | 3.46e-01 | 94.1% | 44.7% |
| 7jw2A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 47.0 | 3.37e-01 | 92.6% | 58.6% |
| 8f5dA05 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.56 | 39.0 | 2.81e-01 | 91.2% | 23.1% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 40.0 | 4.07e-01 | 77.9% | 97.0% |
| 1v5uA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 41.0 | 3.49e-01 | 92.6% | 47.0% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 37.0 | 3.08e-01 | 94.1% | 39.2% |
| 2cocA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 38.0 | 3.44e-01 | 91.2% | 50.0% |
| 2chrA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 44.0 | 3.65e-01 | 91.2% | 57.5% |
| 7qi3A01 | 3.30.2140.20 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › | 0.55 | 39.0 | 2.58e-01 | 76.5% | 74.1% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 42.0 | 3.69e-01 | 94.1% | 55.2% |
| 3htxA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 43.0 | 4.16e-01 | 86.8% | 80.3% |
| 3iibA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 44.0 | 2.94e-01 | 92.6% | 62.7% |
| 3fm8D03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.45e-01 | 92.6% | 50.0% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.53 | 37.0 | 2.40e-01 | 72.1% | 71.8% |
| 2da0A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 36.0 | 3.12e-01 | 97.1% | 43.0% |
| 2fpnA02 | 3.30.360.40 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like | 0.52 | 33.0 | 3.38e-01 | 80.9% | 66.2% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 39.0 | 3.56e-01 | 94.1% | 58.8% |
| 7jw6A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 44.0 | 3.16e-01 | 100.0% | 41.4% |
| 1yt3A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 43.0 | 3.18e-01 | 100.0% | 40.2% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 37.0 | 3.02e-01 | 82.4% | 85.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4261005 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.67 | 59.0 | 3.94e-01 | 100.0% | 46.0% |
| 4463772 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.63 | 55.0 | 3.71e-01 | 100.0% | 48.3% |
| 5044376 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.62 | 54.0 | 3.47e-01 | 100.0% | 35.7% |
| 3527580 | 220.1.1.145 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP | 0.62 | 44.0 | 4.76e-01 | 95.6% | 96.4% |
| 3604297 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.61 | 53.0 | 3.97e-01 | 100.0% | 47.4% |
| 3869434 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 43.0 | 3.54e-01 | 92.6% | 40.0% |
| 3890751 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 45.0 | 4.15e-01 | 100.0% | 62.2% |
| 3557363 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 45.0 | 3.68e-01 | 98.5% | 42.2% |
| 3912099 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 39.0 | 3.46e-01 | 94.1% | 44.8% |
| 3515993 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.58 | 37.0 | 3.11e-01 | 92.6% | 36.7% |
| 4001872 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.58 | 38.0 | 2.86e-01 | 95.6% | 24.9% |
| 3203449 | 3195.1.1.1 ↗ | extended segments › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Mediator of RNA polymerase II transcription subunit 6 › Med6 | 0.57 | 39.0 | 2.88e-01 | 76.5% | 26.5% |
| 3585591 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.57 | 45.0 | 4.14e-01 | 100.0% | 65.6% |
| 3269549 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 41.0 | 3.23e-01 | 100.0% | 34.8% |
| 4314504 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.56 | 47.0 | 3.91e-01 | 100.0% | 80.0% |
| 3937354 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.54 | 47.0 | 3.29e-01 | 100.0% | 34.8% |
| 3798192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 46.0 | 3.25e-01 | 100.0% | 34.3% |
| 3516025 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 40.0 | 3.51e-01 | 92.6% | 53.3% |
| 4237265 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 45.0 | 3.86e-01 | 95.6% | 80.9% |
| 3911301 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 40.0 | 3.78e-01 | 94.1% | 67.1% |
| 3993357 | 11.2.1.57 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28126 | 0.52 | 37.0 | 2.89e-01 | 75.0% | 40.6% |
| 4939419 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.52 | 41.0 | 3.92e-01 | 89.7% | 78.8% |
| 5029795 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 43.0 | 2.82e-01 | 98.5% | 84.8% |
| 3605122 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.52 | 44.0 | 3.70e-01 | 98.5% | 73.6% |
| 3964955 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.51 | 42.0 | 3.30e-01 | 94.1% | 81.2% |
| 4981353 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.50 | 41.0 | 3.93e-01 | 91.2% | 86.3% |
| 4995163 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.50 | 42.0 | 2.97e-01 | 100.0% | 36.3% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.50 | 35.0 | 2.81e-01 | 75.0% | 98.7% |
D2
medium
residues 69-142