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ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00181
Bact-VirALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00181
Identity
- Kingdom:
- phage
Quality
89.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 34-89
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.76 | 46.0 | 4.60e-01 | 75.0% | 60.7% |
| 3lbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.72 | 42.0 | 2.85e-01 | 71.4% | 15.9% |
| 1e88A03 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.67 | 39.0 | 4.28e-01 | 73.2% | 73.8% |
| 2hfsA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.65 | 44.0 | 3.09e-01 | 71.4% | 84.9% |
| 6gfaA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.60 | 36.0 | 3.64e-01 | 91.1% | 58.9% |
| 3gceA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.60 | 46.0 | 3.85e-01 | 98.2% | 47.1% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.59 | 42.0 | 3.79e-01 | 76.8% | 67.9% |
| 6j4nC01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 48.0 | 2.97e-01 | 92.9% | 83.6% |
| 2ozgA03 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.59 | 46.0 | 3.96e-01 | 89.3% | 79.8% |
| 5l37C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.58 | 48.0 | 4.26e-01 | 96.4% | 91.9% |
| 1vw3B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 40.0 | 3.59e-01 | 89.3% | 47.3% |
| 2e4qA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.56 | 48.0 | 3.97e-01 | 100.0% | 61.1% |
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.56 | 42.0 | 3.00e-01 | 82.1% | 51.2% |
| 2dk1A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.56 | 36.0 | 3.80e-01 | 85.7% | 74.0% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 45.0 | 3.85e-01 | 100.0% | 94.3% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 44.0 | 3.70e-01 | 100.0% | 98.3% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.98e-01 | 94.6% | 75.3% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 38.0 | 3.12e-01 | 75.0% | 43.5% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.54 | 46.0 | 4.25e-01 | 96.4% | 79.7% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 43.0 | 2.96e-01 | 94.6% | 75.9% |
| 5ocqA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 2.74e-01 | 92.9% | 63.5% |
| 1w4tA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.53 | 40.0 | 3.32e-01 | 82.1% | 100.0% |
| 3lnbA00 | 3.30.2140.20 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › | 0.53 | 41.0 | 2.64e-01 | 83.9% | 39.7% |
| 2q22A00 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 40.0 | 3.23e-01 | 91.1% | 50.0% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.52 | 44.0 | 3.87e-01 | 100.0% | 71.6% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.51 | 41.0 | 3.26e-01 | 100.0% | 86.2% |
| 4dkaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 40.0 | 3.58e-01 | 96.4% | 59.3% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 42.0 | 2.97e-01 | 98.2% | 71.0% |
| 4k4kA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.51 | 40.0 | 3.15e-01 | 89.3% | 47.2% |
| 1z6hA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 41.0 | 3.89e-01 | 96.4% | 76.4% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 136402 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.72 | 40.0 | 4.52e-01 | 71.4% | 71.4% |
| 3908581 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.68 | 39.0 | 4.44e-01 | 76.8% | 77.5% |
| 5070318 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.68 | 41.0 | 2.77e-01 | 71.4% | 16.2% |
| 3467905 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 55.0 | 5.55e-01 | 94.6% | 96.4% |
| 3908573 | 356.1.1.3 ↗ | few secondary structure elements › PMP inhibitors › PMP inhibitors › PMP inhibitors › VWC2L_2nd | 0.64 | 37.0 | 3.78e-01 | 75.0% | 56.4% |
| 4927437 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 48.0 | 4.52e-01 | 96.4% | 68.6% |
| 3963299 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.62 | 43.0 | 3.45e-01 | 71.4% | 47.3% |
| 4140752 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.62 | 42.0 | 4.41e-01 | 91.1% | 80.0% |
| 5064403 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 43.0 | 4.01e-01 | 96.4% | 58.7% |
| 4951840 | 218.4.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain | 0.59 | 45.0 | 3.84e-01 | 98.2% | 48.0% |
| 3702239 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 45.0 | 3.56e-01 | 89.3% | 60.7% |
| 4595466 | 3572.1.1.2 ↗ | a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 | 0.58 | 41.0 | 3.19e-01 | 75.0% | 63.2% |
| 3583039 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 44.0 | 3.40e-01 | 83.9% | 42.2% |
| 3892517 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.57 | 45.0 | 3.50e-01 | 91.1% | 38.5% |
| 3598090 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.57 | 45.0 | 3.69e-01 | 91.1% | 54.8% |
| 4547663 | 376.1.3.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N | 0.57 | 39.0 | 3.12e-01 | 73.2% | 33.3% |
| 3587639 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.56 | 45.0 | 3.81e-01 | 96.4% | 93.5% |
| 3767109 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 46.0 | 3.39e-01 | 94.6% | 39.4% |
| 4602954 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.56 | 49.0 | 3.94e-01 | 100.0% | 60.0% |
| 4989205 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.55 | 45.0 | 3.10e-01 | 87.5% | 40.6% |
| 5037345 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.55 | 39.0 | 3.08e-01 | 75.0% | 83.5% |
| 3512783 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.55 | 43.0 | 3.02e-01 | 91.1% | 80.0% |
| 3699374 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 43.0 | 3.35e-01 | 91.1% | 60.7% |
| 3774381 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 41.0 | 3.86e-01 | 94.6% | 67.1% |
| 5017215 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 43.0 | 4.39e-01 | 96.4% | 94.5% |
| 4334903 | 4042.1.1.0 ↗ | a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase | 0.53 | 38.0 | 2.97e-01 | 89.3% | 32.6% |
| 3887472 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 38.0 | 3.15e-01 | 78.6% | 41.8% |
| 4929645 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.53 | 36.0 | 2.93e-01 | 73.2% | 85.6% |
| 3408641 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 40.0 | 3.18e-01 | 87.5% | 76.9% |
| 3770803 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.53 | 40.0 | 3.29e-01 | 85.7% | 64.5% |
| 4956007 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 43.0 | 3.60e-01 | 98.2% | 64.8% |
| 3553515 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.51 | 40.0 | 2.58e-01 | 87.5% | 18.3% |
| 1252346 | 268.1.1.3 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2_2 | 0.51 | 39.0 | 3.30e-01 | 87.5% | 69.5% |
| 3315068 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.51 | 41.0 | 3.19e-01 | 98.2% | 57.3% |
| 3168711 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.51 | 42.0 | 3.15e-01 | 100.0% | 45.7% |
| 5045476 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.50 | 38.0 | 4.03e-01 | 85.7% | 94.0% |
| 3842363 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.50 | 37.0 | 3.08e-01 | 83.9% | 41.8% |
| 5018927 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.50 | 40.0 | 2.81e-01 | 92.9% | 25.7% |