Back to structures

ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00186

Bact-Vir

ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00186

Identity

Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 258-386
PDB
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 41.0 4.05e-01 70.5% 85.5%
3e1eC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 41.0 4.01e-01 72.1% 90.8%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 40.0 4.13e-01 70.5% 89.5%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 39.0 3.76e-01 70.5% 92.8%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 39.0 3.84e-01 71.3% 89.4%
2cy9B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 39.0 3.88e-01 70.5% 92.4%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 38.0 3.89e-01 71.3% 94.4%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.54 35.0 4.00e-01 89.9% 88.4%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 39.0 3.44e-01 74.4% 89.2%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 35.0 3.62e-01 99.2% 69.4%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 31.0 3.76e-01 81.4% 93.9%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 37.0 3.30e-01 76.7% 86.1%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.50 37.0 3.99e-01 90.7% 92.7%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.88e-01 79.8% 99.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4588540 213.1.1.34 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_13 0.59 46.0 4.29e-01 82.2% 98.1%
3167061 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 34.0 3.87e-01 78.3% 78.9%
4941377 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.56 42.0 4.00e-01 79.8% 95.0%
3057488 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.53 40.0 3.43e-01 76.7% 86.2%
3455699 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.53 30.0 3.62e-01 79.1% 85.5%
4499680 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 37.0 3.42e-01 71.3% 84.8%
3477673 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.53 40.0 3.51e-01 82.2% 55.2%
3923846 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.52 39.0 3.68e-01 82.2% 63.1%
3271857 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.52 47.0 3.85e-01 98.4% 89.4%
3228597 213.1.1.49 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1248 0.52 37.0 3.76e-01 75.2% 93.8%
4036893 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 27.0 3.38e-01 82.2% 82.5%
3575677 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.51 44.0 3.87e-01 96.1% 90.5%
3943330 213.1.1.64 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF535 0.51 43.0 3.58e-01 93.0% 83.9%
1107912 71.1.1.7 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_2 0.51 37.0 3.30e-01 76.7% 86.1%
D2 medium residues 13-118_131-159
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7drjB01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.54 45.0 4.08e-01 90.4% 100.0%
2q7rB00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.50 39.0 3.85e-01 95.6% 76.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3806441 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.52 39.0 3.13e-01 81.5% 77.6%
3473869 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.50 36.0 3.44e-01 73.3% 65.2%
D3 medium residues 160-257
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 34.0 3.93e-01 95.9% 69.4%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 44.0 4.45e-01 95.9% 71.0%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 43.0 4.91e-01 87.8% 94.7%
1zkrB00 1.20.920.50 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.60 40.0 3.54e-01 93.9% 46.2%
4k7bA00 1.20.120.1740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like 0.57 37.0 3.55e-01 84.7% 56.8%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.55 46.0 4.09e-01 90.8% 71.1%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 45.0 4.27e-01 88.8% 80.5%
4d81A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 36.0 3.68e-01 95.9% 71.3%
3hsqA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.52 29.0 3.47e-01 90.8% 80.9%
6qumA04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.51 43.0 3.80e-01 93.9% 98.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4672223 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.59 35.0 3.91e-01 90.8% 76.0%
3755839 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.54 35.0 3.79e-01 88.8% 80.0%
3170584 611.1.1.1 alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer 0.53 46.0 4.01e-01 98.0% 93.5%
3301182 148.1.3.19 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.51 34.0 3.79e-01 91.8% 88.0%
D4 medium residues 398-551
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.70 38.0 4.82e-01 86.4% 89.0%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 32.0 4.48e-01 84.4% 89.6%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 39.0 4.89e-01 90.9% 97.8%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 36.0 4.32e-01 84.4% 84.7%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 31.0 3.80e-01 84.4% 75.3%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 35.0 4.20e-01 85.1% 86.1%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 36.0 3.41e-01 85.1% 49.5%
3k9iA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 30.0 3.56e-01 92.9% 73.8%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 4.47e-01 91.6% 96.4%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.57 34.0 3.76e-01 94.8% 72.6%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 36.0 4.02e-01 85.7% 81.8%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 37.0 4.22e-01 91.6% 95.4%
5nx5B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 41.0 3.37e-01 77.9% 81.2%
2fji101 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.54 44.0 3.96e-01 85.1% 82.8%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 38.0 4.15e-01 73.4% 92.4%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.54 34.0 3.65e-01 85.7% 71.9%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 36.0 3.74e-01 87.0% 77.0%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 39.0 4.13e-01 87.7% 88.4%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 35.0 3.88e-01 86.4% 89.2%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030256 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.71 36.0 4.55e-01 86.4% 78.9%
4467738 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.71 39.0 5.00e-01 86.4% 91.1%
3934929 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.71 37.0 4.61e-01 85.1% 80.0%
5059668 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 38.0 4.49e-01 84.4% 81.9%
3800823 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 36.0 4.37e-01 85.1% 80.0%
3474661 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.66 39.0 4.50e-01 84.4% 79.1%
3742136 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 32.0 4.47e-01 83.8% 96.0%
3248284 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.65 38.0 4.56e-01 85.7% 84.8%
1510407 6171.1.1.1 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.65 36.0 4.06e-01 89.0% 68.6%
5055769 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 34.0 4.47e-01 87.0% 96.2%
4942736 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 39.0 4.63e-01 85.1% 93.3%
3923182 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.61 44.0 4.47e-01 89.0% 76.0%
3792010 604.1.1.105 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1_2 0.60 35.0 4.15e-01 85.1% 83.8%
5031388 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.60 40.0 4.58e-01 89.0% 91.2%
3598215 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.59 41.0 3.98e-01 70.8% 89.4%
3410416 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.59 39.0 4.29e-01 89.0% 81.6%
3868831 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.58 43.0 4.21e-01 89.0% 69.7%
4024825 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 4.92e-01 95.5% 91.6%
3667437 109.4.1.1374 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_24 0.58 39.0 3.99e-01 97.4% 71.0%
3625427 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.57 38.0 4.38e-01 86.4% 89.6%
3710098 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 37.0 4.11e-01 85.1% 80.8%
3576959 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.57 40.0 3.76e-01 85.1% 59.5%
4654652 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.56 41.0 4.31e-01 88.3% 82.9%
3335074 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 39.0 4.27e-01 89.0% 84.6%
3766400 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.56 38.0 4.46e-01 85.1% 96.4%
3966985 3922.1.1.19 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF1090 0.56 34.0 4.11e-01 72.7% 90.4%
3277476 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 39.0 3.96e-01 87.7% 71.3%
3691077 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 37.0 3.92e-01 86.4% 74.3%
None 0.56 51.0 4.14e-01 100.0% 75.9%
3249439 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 42.0 4.19e-01 89.0% 76.9%
4049979 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.54 40.0 4.31e-01 87.0% 88.1%
3878975 633.21.1.23 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.52 43.0 4.48e-01 89.0% 92.9%
3280086 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 44.0 4.22e-01 91.6% 96.1%
4631965 633.6.1.11 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › XK-related 0.51 46.0 3.70e-01 100.0% 93.3%
3601815 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 45.0 3.86e-01 93.5% 96.2%
3969620 5069.1.2.2 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › DUF3483 0.50 43.0 3.95e-01 100.0% 70.8%