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ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00256
Bact-VirALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00256
Identity
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-81
Domain cluster:
rep: peptidyl-tRNA_hydrolase__YP_009447948__Flamingopox_virus_FGPVKD09__2059380__D17-122
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q7sA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.85 | 80.0 | 6.93e-01 | 100.0% | 84.6% |
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.61 | 47.0 | 4.72e-01 | 83.7% | 98.8% |
| 4r2fA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 48.0 | 3.71e-01 | 90.0% | 84.1% |
| 2hhcA02 | 3.40.50.11350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 50.0 | 4.16e-01 | 95.0% | 85.2% |
| 2wkbA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.59 | 52.0 | 4.91e-01 | 100.0% | 99.0% |
| 2qsiA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 42.0 | 4.17e-01 | 100.0% | 75.9% |
| 3jv9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 45.0 | 4.18e-01 | 90.0% | 100.0% |
| 3mpkA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 48.0 | 4.05e-01 | 97.5% | 71.4% |
| 3c6vA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 48.0 | 4.09e-01 | 100.0% | 75.5% |
| 3ec3A02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 42.0 | 3.77e-01 | 100.0% | 55.5% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.55 | 36.0 | 3.19e-01 | 70.0% | 43.0% |
| 1mwwB00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 45.0 | 4.06e-01 | 97.5% | 92.4% |
| 2f7aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 46.0 | 4.08e-01 | 98.8% | 69.4% |
| 2ql3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 46.0 | 4.32e-01 | 100.0% | 87.9% |
| 8dqaA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 44.0 | 4.19e-01 | 98.8% | 100.0% |
| 7febA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.52 | 43.0 | 3.81e-01 | 97.5% | 100.0% |
| 3h79A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 38.0 | 3.45e-01 | 100.0% | 55.7% |
| 3ap1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.81e-01 | 87.5% | 87.5% |
| 4nxiA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 38.0 | 2.99e-01 | 83.7% | 98.4% |
| 2ltkA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 37.0 | 3.53e-01 | 100.0% | 64.9% |
| 3hhfA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 39.0 | 3.71e-01 | 87.5% | 99.0% |
| 4q8rA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 44.0 | 3.95e-01 | 98.8% | 76.3% |
| 3cb2A02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.51 | 35.0 | 3.35e-01 | 100.0% | 59.6% |
| 1i6aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 43.0 | 3.99e-01 | 98.8% | 79.6% |
| 5b7hB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 43.0 | 3.92e-01 | 97.5% | 76.9% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946237 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.92 | 88.0 | 7.58e-01 | 100.0% | 90.4% |
| 4947020 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.92 | 88.0 | 7.57e-01 | 100.0% | 90.4% |
| 5030351 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.92 | 87.0 | 7.56e-01 | 100.0% | 89.6% |
| 4559979 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.92 | 87.0 | 7.39e-01 | 100.0% | 88.3% |
| 3741182 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.91 | 86.0 | 6.94e-01 | 100.0% | 70.7% |
| 3990988 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.91 | 86.0 | 7.23e-01 | 100.0% | 87.9% |
| 4025295 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.91 | 86.0 | 7.11e-01 | 100.0% | 86.0% |
| 3277850 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.90 | 85.0 | 7.96e-01 | 100.0% | 96.8% |
| 3947189 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.64 | 50.0 | 3.58e-01 | 87.5% | 89.4% |
| 4059350 | 315.2.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › DNA damage-inducible protein DinI › DNA damage-inducible protein DinI › DinI | 0.63 | 47.0 | 4.86e-01 | 81.2% | 100.0% |
| 3270086 | 2485.1.1.90 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_PDIA6_C | 0.63 | 46.0 | 3.95e-01 | 100.0% | 48.5% |
| 3982398 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.62 | 54.0 | 4.04e-01 | 98.8% | 90.7% |
| 5020721 | 2485.1.1.27 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › KaiB | 0.60 | 43.0 | 3.92e-01 | 100.0% | 57.1% |
| 3564375 | 2485.1.1.107 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF30536 | 0.59 | 45.0 | 3.86e-01 | 100.0% | 50.8% |
| 3633871 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 3.51e-01 | 91.3% | 69.9% |
| 3225630 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.57 | 41.0 | 3.64e-01 | 100.0% | 52.2% |
| 3409779 | 2485.1.1.37 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 | 0.57 | 40.0 | 3.68e-01 | 100.0% | 56.2% |
| 3742379 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.57 | 42.0 | 3.59e-01 | 100.0% | 48.5% |
| 3455452 | 2485.1.1.90 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredox_PDIA6_C | 0.56 | 43.0 | 3.75e-01 | 100.0% | 52.8% |
| 4998503 | 2485.1.1.38 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 | 0.55 | 41.0 | 3.76e-01 | 100.0% | 61.0% |
| 3474138 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 46.0 | 3.84e-01 | 100.0% | 96.8% |
| 3988548 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.54 | 42.0 | 2.94e-01 | 85.0% | 51.3% |
| 3410731 | 2011.1.1.2 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14,Pepdidase_M14_N | 0.54 | 41.0 | 2.63e-01 | 100.0% | 15.7% |
| 3708571 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 41.0 | 3.55e-01 | 100.0% | 51.5% |
| 5007884 | 2485.1.1.38 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 | 0.53 | 36.0 | 3.50e-01 | 100.0% | 61.1% |
| 4018547 | 2485.1.1.113 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF7656 | 0.53 | 36.0 | 3.33e-01 | 100.0% | 54.3% |
| 3261678 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.53 | 41.0 | 3.54e-01 | 100.0% | 53.6% |
| 3405205 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 37.0 | 3.48e-01 | 100.0% | 58.1% |
| 3930352 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 43.0 | 3.64e-01 | 100.0% | 54.8% |
| 3785704 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 45.0 | 3.61e-01 | 100.0% | 74.5% |
| 3403412 | 2485.1.1.87 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N | 0.51 | 39.0 | 3.41e-01 | 100.0% | 51.5% |
| 5083321 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.51 | 38.0 | 3.61e-01 | 100.0% | 65.0% |
| 3698942 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.51 | 39.0 | 3.32e-01 | 100.0% | 49.6% |
| 4028637 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.51 | 37.0 | 3.39e-01 | 100.0% | 57.3% |
| 3504127 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 37.0 | 3.27e-01 | 81.2% | 56.9% |
| 3176064 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 41.0 | 3.36e-01 | 100.0% | 47.1% |
| 3588813 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.50 | 38.0 | 2.76e-01 | 85.0% | 52.6% |
| 4030075 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 42.0 | 3.59e-01 | 100.0% | 55.0% |