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ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00260

Bact-Vir

ALT_09252017_20_scaffold_111_prodigal-single.1__X__X__00260

Identity

Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-46
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f13B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 50.0 3.48e-01 72.7% 49.7%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.62 53.0 3.28e-01 100.0% 17.5%
8a3pA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.59 45.0 3.06e-01 88.6% 93.2%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.58 42.0 3.27e-01 79.5% 82.0%
3m9gA02 3.30.10.20 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › 0.58 46.0 4.10e-01 95.5% 82.4%
1uqtA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 38.0 2.57e-01 88.6% 90.9%
1j8uA00 1.10.800.10 Mainly Alpha › Orthogonal Bundle › Phenylalanine Hydroxylase › Aromatic amino acid hydroxylase 0.54 39.0 2.45e-01 86.4% 35.8%
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.53 44.0 2.91e-01 100.0% 96.2%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.51 37.0 3.11e-01 81.8% 45.5%
6jytA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 40.0 2.86e-01 100.0% 44.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051240 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 3.65e-01 84.1% 46.7%
3782755 109.4.1.3316 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29173, PF29177 0.58 48.0 2.87e-01 100.0% 13.1%
3434734 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 45.0 3.41e-01 100.0% 64.3%
4176445 247.1.1.44 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B, RMMBL, Lactamase_B_6 0.58 39.0 2.40e-01 72.7% 13.8%
3944717 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 48.0 2.99e-01 100.0% 17.2%
3256855 2004.1.1.150 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DRMBL 0.56 45.0 3.23e-01 100.0% 70.0%
3219594 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 38.0 2.70e-01 72.7% 26.2%
3494153 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.55 43.0 2.90e-01 100.0% 20.5%
3180442 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.54 45.0 2.67e-01 100.0% 13.5%
4014518 261.1.1.0 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.53 45.0 3.19e-01 100.0% 38.0%
5075768 7592.1.1.12 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › RMMBL 0.53 35.0 2.67e-01 70.5% 24.8%
3594218 309.1.2.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.52 37.0 2.47e-01 77.3% 20.5%
3536961 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 43.0 3.72e-01 100.0% 58.7%
1807484 59.1.1.2 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 0.52 39.0 3.23e-01 100.0% 84.5%
3176188 109.4.1.3157 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29173, PF29174, PF29177 0.52 39.0 2.43e-01 100.0% 12.4%
4957662 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.51 37.0 3.36e-01 84.1% 84.3%
5000373 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 34.0 2.26e-01 72.7% 58.7%
4949589 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 39.0 2.59e-01 88.6% 90.7%
3652336 2004.1.1.150 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DRMBL 0.51 38.0 2.68e-01 100.0% 68.1%
5027859 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.51 38.0 2.68e-01 81.8% 31.9%
4184406 4070.1.1.2 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.50 37.0 2.43e-01 86.4% 27.5%
5012421 101.1.2.889 ↗ alpha arrays › HTH › HTH › winged helix domain › Arc_trans_TRASH 0.50 40.0 3.23e-01 100.0% 76.2%