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ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00004

Bact-Vir

ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00004

Identity

Kingdom:
phage

Quality

95.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-103
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 39.0 5.01e-01 76.7% 96.7%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 38.0 4.63e-01 88.3% 86.2%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 37.0 4.83e-01 88.3% 100.0%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 38.0 4.51e-01 76.7% 82.9%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 39.0 4.79e-01 79.6% 95.3%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 37.0 4.73e-01 76.7% 100.0%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.65 34.0 3.89e-01 88.3% 67.5%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 31.0 3.45e-01 87.4% 56.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 37.0 4.60e-01 88.3% 96.7%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 39.0 4.83e-01 76.7% 100.0%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 36.0 4.58e-01 74.8% 100.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 30.0 3.69e-01 76.7% 76.7%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 31.0 3.36e-01 99.0% 59.5%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 40.0 4.32e-01 89.3% 83.7%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 33.0 3.39e-01 88.3% 56.1%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 35.0 4.10e-01 88.3% 91.2%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 40.0 4.39e-01 97.1% 89.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.73e-01 77.7% 93.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 4.10e-01 100.0% 76.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3550579 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 39.0 5.22e-01 76.7% 100.0%
3903323 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 39.0 4.50e-01 76.7% 73.3%
3561462 148.1.3.384 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 0.71 39.0 3.23e-01 76.7% 32.4%
3801719 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 40.0 4.82e-01 76.7% 82.9%
4056584 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 40.0 4.50e-01 89.3% 72.5%
3473172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 42.0 4.79e-01 89.3% 80.0%
3174058 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 40.0 4.61e-01 76.7% 78.7%
3926701 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 38.0 4.62e-01 88.3% 83.8%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 38.0 4.46e-01 88.3% 77.3%
3505437 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 38.0 4.22e-01 76.7% 69.4%
4018667 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 40.0 3.83e-01 89.3% 53.0%
3788449 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 38.0 4.57e-01 88.3% 87.1%
3483375 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.61e-01 76.7% 86.7%
3470815 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 37.0 4.43e-01 76.7% 88.6%
3405828 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.62 29.0 3.70e-01 73.8% 78.2%
3539094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.38e-01 88.3% 85.0%
3398224 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.60 29.0 3.99e-01 70.9% 96.0%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 38.0 4.45e-01 88.3% 90.7%
3414238 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.59 31.0 3.95e-01 71.8% 89.7%
3873577 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.58 40.0 3.82e-01 100.0% 60.8%
3576228 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 36.0 3.77e-01 84.5% 70.7%
3526217 3246.1.1.7 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Adt-1 0.56 37.0 4.03e-01 100.0% 83.5%
3883895 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 39.0 3.95e-01 77.7% 91.0%
5025498 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.52 32.0 3.43e-01 88.3% 71.1%
3992625 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 4.20e-01 100.0% 87.6%