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ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00048
Bact-VirALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00048
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-116
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_0-10091_curated_closed_complete_start-adj_prodigal-single.1__X__X__00942__D15-98
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.68 | 47.0 | 4.19e-01 | 72.4% | 80.3% |
| 4bemJ00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.60 | 48.0 | 3.95e-01 | 86.7% | 95.0% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 40.0 | 4.02e-01 | 93.9% | 68.3% |
| 7wz5A01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 45.0 | 3.99e-01 | 83.7% | 60.9% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.57 | 41.0 | 3.89e-01 | 75.5% | 94.1% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.56 | 43.0 | 3.66e-01 | 81.6% | 87.7% |
| 1x9nA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.54 | 43.0 | 3.13e-01 | 86.7% | 38.2% |
| 3gdeA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.53 | 42.0 | 3.26e-01 | 85.7% | 51.3% |
| 3io1A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 44.0 | 3.26e-01 | 100.0% | 95.4% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.50 | 39.0 | 3.10e-01 | 81.6% | 69.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4782663 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.67 | 51.0 | 3.88e-01 | 79.6% | 47.7% |
| 4097005 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.61 | 48.0 | 3.73e-01 | 85.7% | 51.8% |
| 3517342 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 50.0 | 4.06e-01 | 91.8% | 95.7% |
| 3492394 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.59 | 39.0 | 3.43e-01 | 90.8% | 47.1% |
| 4980806 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.58 | 35.0 | 3.32e-01 | 88.8% | 49.2% |
| 5082279 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 45.0 | 4.18e-01 | 82.7% | 86.7% |
| 3866648 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.56 | 44.0 | 3.73e-01 | 84.7% | 91.9% |
| 3598855 | 3543.1.1.0 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel | 0.55 | 46.0 | 3.72e-01 | 91.8% | 72.6% |
| 3727891 | 633.23.1.36 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PF30929 | 0.54 | 42.0 | 3.38e-01 | 82.7% | 78.9% |
| 3762118 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.54 | 43.0 | 3.63e-01 | 84.7% | 93.3% |
| 3780523 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.54 | 43.0 | 3.64e-01 | 84.7% | 94.4% |
| 3916675 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.54 | 41.0 | 3.44e-01 | 80.6% | 84.7% |
| 4628667 | 605.4.1.13 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PANTS-like | 0.54 | 34.0 | 4.12e-01 | 85.7% | 96.9% |
| 4480629 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.54 | 43.0 | 3.72e-01 | 91.8% | 75.4% |
| 3719374 | 3843.1.1.11 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DGF-1_C | 0.54 | 42.0 | 3.31e-01 | 82.7% | 63.0% |
| 4520107 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.53 | 42.0 | 3.76e-01 | 84.7% | 94.3% |
| 3879044 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.53 | 41.0 | 3.78e-01 | 81.6% | 88.8% |
| 3596769 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 36.0 | 3.25e-01 | 70.4% | 89.0% |
| 4002338 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 42.0 | 3.76e-01 | 85.7% | 62.9% |
| 3914006 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 35.0 | 3.80e-01 | 79.6% | 82.5% |
| 3868831 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.53 | 41.0 | 3.45e-01 | 82.7% | 78.2% |
| 3798144 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.53 | 41.0 | 3.35e-01 | 81.6% | 86.3% |
| 3388493 | 633.10.1.15 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 | 0.53 | 41.0 | 3.75e-01 | 82.7% | 90.8% |
| 5035972 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.53 | 37.0 | 2.81e-01 | 74.5% | 45.9% |
| 3899721 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.53 | 41.0 | 3.49e-01 | 84.7% | 90.3% |
| 3498332 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.51 | 39.0 | 3.45e-01 | 82.7% | 86.7% |
| 3547257 | 604.1.1.115 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PANTS-like | 0.51 | 34.0 | 3.90e-01 | 89.8% | 94.3% |
| 3705690 | 3543.1.1.1 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › Gpr1_Fun34_YaaH | 0.51 | 37.0 | 3.05e-01 | 78.6% | 81.5% |