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ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00074
Bact-VirALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00074
Identity
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-165
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cqyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 40.0 | 3.48e-01 | 75.0% | 98.4% |
| 1pz4A00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.53 | 40.0 | 4.15e-01 | 93.5% | 86.7% |
| 2gwnA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.52 | 36.0 | 4.01e-01 | 70.2% | 100.0% |
| 3h6eA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 41.0 | 3.39e-01 | 87.1% | 92.3% |
| 4iqzB01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 25.0 | 3.20e-01 | 77.4% | 80.6% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 28.0 | 3.29e-01 | 80.6% | 74.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4952984 | 268.2.1.7 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › DUF4012 | 0.58 | 44.0 | 3.78e-01 | 79.8% | 94.9% |
| 5021767 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.53 | 46.0 | 4.59e-01 | 94.4% | 93.8% |
D2
high
residues 177-219
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7sz2A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.85 | 57.0 | 4.37e-01 | 72.1% | 32.6% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.78 | 53.0 | 4.30e-01 | 72.1% | 37.3% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 4.43e-01 | 81.4% | 85.5% |
| 1q90C00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.63 | 50.0 | 3.65e-01 | 90.7% | 65.1% |
| 3bs1A00 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.62 | 44.0 | 3.39e-01 | 90.7% | 32.0% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.62 | 48.0 | 3.28e-01 | 90.7% | 26.6% |
| 3rlfF02 | 3.10.650.10 | Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like | 0.60 | 45.0 | 3.74e-01 | 83.7% | 68.3% |
| 1xmtA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 45.0 | 3.59e-01 | 86.0% | 67.4% |
| 1l5jA02 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.60 | 50.0 | 3.23e-01 | 97.7% | 86.5% |
| 4wfsA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 48.0 | 3.09e-01 | 93.0% | 27.5% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.59 | 40.0 | 3.76e-01 | 72.1% | 80.4% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 48.0 | 2.72e-01 | 88.4% | 88.8% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 44.0 | 2.50e-01 | 83.7% | 93.1% |
| 1ffvB03 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.58 | 45.0 | 3.16e-01 | 95.3% | 33.1% |
| 4n06A01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.57 | 45.0 | 3.78e-01 | 93.0% | 89.0% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.57 | 44.0 | 3.29e-01 | 93.0% | 65.9% |
| 3iylW04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 44.0 | 2.77e-01 | 88.4% | 35.2% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.55 | 43.0 | 2.83e-01 | 90.7% | 19.7% |
| 1m2vB03 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.55 | 40.0 | 3.75e-01 | 88.4% | 80.6% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 36.0 | 3.04e-01 | 72.1% | 33.0% |
| 3k1lA02 | 3.30.457.30 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.54 | 42.0 | 3.41e-01 | 88.4% | 68.9% |
| 1ej6A04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 2.61e-01 | 88.4% | 35.2% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.53 | 42.0 | 2.57e-01 | 100.0% | 23.5% |
| 1a8lA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 36.0 | 2.88e-01 | 76.7% | 84.0% |
| 4l3rA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 37.0 | 2.81e-01 | 83.7% | 54.5% |
| 1wxcB01 | 3.30.1880.10 | Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like | 0.51 | 40.0 | 3.70e-01 | 95.3% | 80.6% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3645247 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.90 | 60.0 | 4.70e-01 | 72.1% | 35.3% |
| 3581513 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.87 | 59.0 | 4.73e-01 | 88.4% | 38.7% |
| 3254634 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.85 | 60.0 | 4.90e-01 | 88.4% | 42.7% |
| 3251743 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.84 | 53.0 | 4.19e-01 | 72.1% | 33.3% |
| 3254632 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.79 | 51.0 | 4.45e-01 | 88.4% | 44.6% |
| 3270757 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.78 | 51.0 | 4.14e-01 | 88.4% | 36.3% |
| 3622446 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.78 | 52.0 | 4.46e-01 | 72.1% | 42.9% |
| 907 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.78 | 53.0 | 3.95e-01 | 72.1% | 28.2% |
| 3901407 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.78 | 59.0 | 4.46e-01 | 81.4% | 45.3% |
| 3254631 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.76 | 49.0 | 4.32e-01 | 88.4% | 44.6% |
| 3262963 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.74 | 52.0 | 4.82e-01 | 74.4% | 63.6% |
| 3921414 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.73 | 49.0 | 4.06e-01 | 72.1% | 38.0% |
| 3602639 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 59.0 | 4.41e-01 | 90.7% | 48.2% |
| 3609067 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.72 | 49.0 | 4.25e-01 | 72.1% | 44.3% |
| 4583258 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.72 | 61.0 | 3.53e-01 | 100.0% | 11.2% |
| 3337215 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.70 | 47.0 | 3.79e-01 | 72.1% | 35.3% |
| 3980811 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.68 | 57.0 | 5.19e-01 | 97.7% | 93.3% |
| 3974544 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 57.0 | 5.32e-01 | 100.0% | 100.0% |
| 1650067 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.66 | 45.0 | 4.94e-01 | 81.4% | 100.0% |
| 5036301 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.66 | 46.0 | 4.80e-01 | 72.1% | 82.5% |
| 4948064 | 375.10.1.6 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › Zn_Ribbon_TF | 0.66 | 48.0 | 4.63e-01 | 79.1% | 74.0% |
| 4940212 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.66 | 47.0 | 4.64e-01 | 76.7% | 88.9% |
| 4437923 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 54.0 | 3.41e-01 | 97.7% | 22.0% |
| 5075345 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.65 | 48.0 | 4.68e-01 | 81.4% | 74.0% |
| 4845616 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.65 | 45.0 | 4.54e-01 | 74.4% | 84.1% |
| 4028249 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.65 | 44.0 | 4.11e-01 | 72.1% | 55.6% |
| 3285469 | 316.1.1.21 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit | 0.65 | 50.0 | 3.28e-01 | 86.0% | 59.1% |
| 3246307 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.65 | 47.0 | 3.51e-01 | 79.1% | 36.5% |
| 3505725 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 4.92e-01 | 95.3% | 92.7% |
| 4472417 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.64 | 47.0 | 3.14e-01 | 81.4% | 20.0% |
| 3933293 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.63 | 49.0 | 4.61e-01 | 93.0% | 81.0% |
| 3598119 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.63 | 44.0 | 3.86e-01 | 86.0% | 47.1% |
| 3289102 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 42.0 | 4.55e-01 | 72.1% | 100.0% |
| 5009463 | 231.1.1.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1 | 0.61 | 48.0 | 2.74e-01 | 100.0% | 8.1% |
| 3425319 | 2.1.1.87 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RPA43_OB | 0.60 | 43.0 | 3.27e-01 | 86.0% | 30.9% |
| 3591420 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 42.0 | 4.17e-01 | 86.0% | 71.1% |
| 3400447 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 46.0 | 2.99e-01 | 90.7% | 21.5% |
| None | — | 0.59 | 41.0 | 2.66e-01 | 72.1% | 44.5% | |
| 3983892 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.59 | 46.0 | 3.51e-01 | 93.0% | 73.9% |
| 3356611 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.59 | 45.0 | 4.30e-01 | 90.7% | 81.8% |
| 3293816 | 2.1.1.81 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 | 0.58 | 43.0 | 3.49e-01 | 81.4% | 78.9% |
| 4013628 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 44.0 | 3.58e-01 | 88.4% | 64.4% |
| 3599933 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 2.68e-01 | 90.7% | 75.0% |
| 3359789 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.57 | 39.0 | 3.25e-01 | 88.4% | 37.6% |
| 5025277 | 284.1.1.13 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP-like_N | 0.54 | 42.0 | 4.06e-01 | 100.0% | 94.5% |
| 5014724 | 295.1.1.51 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C | 0.53 | 37.0 | 3.06e-01 | 81.4% | 85.0% |
| 4454089 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.53 | 43.0 | 2.98e-01 | 97.7% | 89.1% |
| 4177976 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.53 | 45.0 | 3.33e-01 | 97.7% | 89.6% |
| 3602053 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 39.0 | 2.36e-01 | 97.7% | 10.4% |