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ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00085

Bact-Vir

ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00085

Identity

Kingdom:
phage

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-100
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 61.0 5.79e-01 100.0% 96.4%
3ktoA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 59.0 5.37e-01 100.0% 99.2%
2l82A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 58.0 4.87e-01 100.0% 94.4%
3hv2A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 58.0 5.10e-01 98.9% 88.2%
3gl9A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 57.0 5.23e-01 97.8% 98.3%
3crnA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 58.0 5.23e-01 100.0% 91.5%
3cg4A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 57.0 5.21e-01 100.0% 95.2%
3cfyA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.65 57.0 5.11e-01 100.0% 92.3%
6ontA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 56.0 5.21e-01 100.0% 98.3%
4p1zA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 57.0 5.14e-01 100.0% 93.7%
3egcD02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 51.0 4.55e-01 85.9% 85.3%
5u8kA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 55.0 5.10e-01 98.9% 97.5%
2etxA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.64 50.0 5.04e-01 91.3% 83.0%
1mb3A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 56.0 5.20e-01 100.0% 98.3%
1wcwA01 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 56.0 5.08e-01 98.9% 97.6%
5q22A02 3.40.50.12650 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 47.0 4.02e-01 78.3% 81.8%
3f6cA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 55.0 4.94e-01 97.8% 88.4%
4bu0A02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.63 48.0 4.99e-01 95.7% 88.1%
7lzaA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 55.0 5.12e-01 98.9% 99.2%
3olcX03 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.63 48.0 4.94e-01 95.7% 86.2%
5t3yA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 55.0 5.00e-01 98.9% 95.2%
7l4aA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 55.0 4.22e-01 100.0% 99.1%
4xkjA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 55.0 4.86e-01 100.0% 91.2%
2jb9B00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 54.0 4.98e-01 98.9% 97.5%
3grcA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 53.0 4.89e-01 98.9% 96.8%
3h5iA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 54.0 4.94e-01 100.0% 98.4%
3u3zA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.61 48.0 4.72e-01 92.4% 80.4%
4l9aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 53.0 3.85e-01 100.0% 90.8%
1qo0D01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 52.0 4.74e-01 97.8% 89.8%
1xeaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 46.0 4.28e-01 83.7% 98.3%
6zpkA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.60 48.0 4.94e-01 91.3% 91.9%
1np6B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 53.0 4.69e-01 100.0% 96.3%
3al2A01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.60 47.0 4.30e-01 95.7% 64.2%
3lucA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 51.0 4.65e-01 98.9% 96.1%
4n40A02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.59 48.0 4.87e-01 96.7% 90.0%
6j0yA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.59 47.0 4.61e-01 95.7% 79.2%
4koaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 46.0 4.27e-01 85.9% 98.4%
2gdzA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 50.0 3.72e-01 100.0% 86.5%
2ebwA00 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.58 44.0 4.40e-01 88.0% 77.3%
1gtkA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 41.0 4.09e-01 84.8% 70.0%
3olcX02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.58 47.0 4.62e-01 100.0% 82.7%
1yqgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 48.0 4.19e-01 94.6% 94.0%
4bu0A01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.58 48.0 4.76e-01 97.8% 85.7%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 48.0 3.92e-01 91.3% 81.4%
2npnA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.57 43.0 3.86e-01 80.4% 77.5%
3uenA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.57 48.0 4.64e-01 92.4% 81.0%
1l0bA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.57 46.0 4.43e-01 91.3% 76.6%
4bmdA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.57 45.0 4.45e-01 95.7% 81.8%
2p2sA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 49.0 4.35e-01 98.9% 97.1%
1rjgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 48.0 3.40e-01 96.7% 32.6%
1z56C01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.55 44.0 3.95e-01 91.3% 61.5%
4g4pA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 40.0 3.98e-01 78.3% 76.0%
4j1qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 2.85e-01 97.8% 19.2%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.61e-01 94.6% 92.3%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933349 2007.2.2.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like 0.71 55.0 5.88e-01 98.9% 97.5%
4943109 2007.1.1.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.68 60.0 4.80e-01 98.9% 97.8%
3904888 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.66 48.0 5.14e-01 93.5% 88.7%
3985306 2007.1.3.43 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PF30453 0.64 55.0 5.14e-01 95.7% 92.2%
2499765 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.64 49.0 5.14e-01 95.7% 90.4%
3259606 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.64 48.0 4.74e-01 95.7% 74.0%
4336279 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.64 56.0 4.85e-01 98.9% 83.4%
3300111 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.64 49.0 4.78e-01 94.6% 76.0%
3915440 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.64 50.0 5.13e-01 92.4% 86.7%
3937446 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.64 49.0 4.76e-01 95.7% 75.0%
3259607 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.63 48.0 4.79e-01 95.7% 77.9%
3943165 2007.1.2.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 0.63 56.0 4.93e-01 98.9% 87.4%
4241902 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.63 48.0 4.45e-01 95.7% 62.5%
3470009 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.63 48.0 4.88e-01 95.7% 83.3%
3413497 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.63 50.0 5.03e-01 95.7% 84.2%
3506891 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.62 49.0 4.89e-01 95.7% 82.1%
1489340 2003.1.9.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins 0.62 55.0 4.12e-01 100.0% 60.8%
3400476 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.62 48.0 4.74e-01 95.7% 77.0%
3343403 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.62 46.0 4.31e-01 94.6% 63.5%
3270702 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.62 49.0 4.65e-01 95.7% 71.8%
3233291 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.61 44.0 4.53e-01 95.7% 81.2%
3602098 2007.23.1.1 a/b three-layered sandwiches › Flavodoxin-like › CbiG N-terminal domain-like › CbiG N-terminal domain-like › CbiG_N 0.61 51.0 4.89e-01 93.5% 89.1%
4323968 2007.2.1.4 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_NdrI 0.61 53.0 4.80e-01 98.9% 95.3%
3884227 7568.1.1.15 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_TopB1_SLF1 0.61 44.0 4.44e-01 94.6% 76.7%
3401292 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.61 48.0 4.65e-01 95.7% 75.2%
3171344 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.61 50.0 4.34e-01 95.7% 58.6%
3573818 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.61 47.0 4.18e-01 96.7% 58.5%
3401291 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.61 48.0 4.67e-01 95.7% 78.0%
4436240 7502.1.1.6 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ_C 0.60 36.0 4.27e-01 95.7% 98.2%
3232914 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.60 53.0 4.94e-01 98.9% 100.0%
3484127 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.60 47.0 4.19e-01 95.7% 58.5%
3270246 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.60 46.0 4.71e-01 95.7% 85.6%
3964871 2003.1.1.147 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PDH_N, F420_oxidored 0.59 49.0 4.06e-01 94.6% 89.4%
4444924 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.59 46.0 4.22e-01 95.7% 63.2%
3478593 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.59 49.0 4.60e-01 91.3% 75.2%
3473681 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.59 46.0 4.12e-01 95.7% 58.5%
3854159 7568.1.1.15 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_TopB1_SLF1 0.59 46.0 4.68e-01 98.9% 86.7%
3697509 7568.1.1.14 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › NIBRIN_BRCT_II 0.59 52.0 4.70e-01 97.8% 89.6%
3933793 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.59 44.0 4.53e-01 95.7% 83.3%
3506877 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.59 47.0 4.34e-01 92.4% 66.7%
4276429 2007.2.1.4 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_NdrI 0.58 51.0 4.51e-01 100.0% 94.3%
3730526 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.58 45.0 4.55e-01 95.7% 85.6%
3273413 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.57 47.0 4.44e-01 92.4% 74.5%
3621796 7568.1.1.20 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PF29099 0.57 48.0 4.59e-01 93.5% 87.3%
4991289 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.57 42.0 3.47e-01 79.3% 56.6%
3093458 7568.1.1.15 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_TopB1_SLF1 0.57 43.0 4.53e-01 93.5% 89.3%
4681480 2007.2.1.4 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_NdrI 0.57 49.0 4.31e-01 100.0% 93.8%
3476176 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.57 48.0 4.51e-01 92.4% 77.3%
3613441 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.57 45.0 4.46e-01 95.7% 84.2%
4937425 7504.1.1.1 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like 0.57 49.0 3.99e-01 97.8% 98.9%
3781702 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.56 48.0 4.69e-01 95.7% 86.0%
3597566 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.56 47.0 4.43e-01 91.3% 84.5%
4077067 2003.1.5.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.56 43.0 3.44e-01 81.5% 60.0%
3592079 7590.1.1.0 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.56 49.0 4.05e-01 98.9% 76.5%
3473646 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.56 48.0 4.35e-01 95.7% 70.4%
3708677 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.56 48.0 4.20e-01 95.7% 84.3%
3596799 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.56 44.0 4.30e-01 95.7% 77.1%
3479255 7568.1.1.16 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT+DNA_ligase_IV 0.55 47.0 4.07e-01 95.7% 58.7%
3646272 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.55 45.0 4.41e-01 91.3% 85.0%
3171342 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.54 48.0 4.51e-01 100.0% 84.3%
3952314 2003.1.5.155 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_25 0.54 41.0 3.37e-01 81.5% 57.7%
3395129 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.54 48.0 4.65e-01 100.0% 93.3%
3601781 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.53 45.0 3.03e-01 97.8% 90.5%
3650550 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.53 46.0 4.17e-01 98.9% 84.6%
3954217 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 42.0 3.18e-01 91.3% 79.6%
4953843 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 39.0 3.34e-01 81.5% 51.7%
5011063 2007.6.1.0 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.51 43.0 4.12e-01 97.8% 83.6%
D2 high residues 106-260
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yt3A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 68.0 6.25e-01 100.0% 97.4%
7jw6A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 64.0 5.73e-01 94.2% 94.9%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.72 62.0 5.61e-01 92.9% 98.1%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 65.0 5.47e-01 100.0% 71.8%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 65.0 5.53e-01 100.0% 79.8%
1bdp001 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 62.0 5.73e-01 100.0% 97.4%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 30.0 4.22e-01 91.0% 100.0%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 30.0 4.13e-01 89.0% 100.0%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 30.0 4.08e-01 91.6% 95.0%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 20.0 3.04e-01 92.9% 71.0%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 27.0 3.89e-01 77.4% 100.0%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.57 31.0 3.93e-01 92.3% 92.0%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 30.0 3.90e-01 93.5% 95.1%
5ly3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 44.0 3.99e-01 82.6% 94.1%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 21.0 2.86e-01 85.8% 72.0%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.50 36.0 3.40e-01 73.5% 93.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3412738 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.76 70.0 6.01e-01 100.0% 89.6%
3994654 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.75 67.0 5.72e-01 96.1% 91.4%
3386843 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.75 30.0 4.75e-01 79.4% 96.7%
3997031 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.74 68.0 6.01e-01 100.0% 95.1%
3798192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 68.0 5.96e-01 100.0% 93.0%
3937354 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.73 67.0 5.89e-01 100.0% 93.5%
3400709 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 67.0 5.76e-01 100.0% 78.0%
3607580 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 68.0 5.92e-01 100.0% 97.8%
3598787 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 67.0 5.55e-01 100.0% 91.7%
2725515 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.72 63.0 5.61e-01 93.5% 95.0%
3922908 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.72 63.0 5.47e-01 92.9% 89.1%
3705325 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.72 66.0 5.47e-01 100.0% 78.5%
3778350 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.72 60.0 4.98e-01 87.7% 73.1%
3927943 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 66.0 5.59e-01 100.0% 88.0%
4329924 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.71 59.0 5.00e-01 87.7% 73.9%
3940277 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.71 65.0 5.67e-01 100.0% 89.3%
3236261 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.71 65.0 5.52e-01 100.0% 88.8%
4029824 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.71 65.0 5.30e-01 100.0% 72.5%
5066483 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.68 48.0 4.70e-01 72.9% 100.0%
4339694 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 61.0 4.34e-01 100.0% 40.4%
4927002 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.62 34.0 4.41e-01 81.3% 96.5%
3585591 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.57 34.0 4.23e-01 77.4% 100.0%
4928066 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 3.95e-01 74.8% 100.0%
3943749 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 38.0 3.27e-01 70.3% 100.0%
3605401 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.54 32.0 4.11e-01 77.4% 100.0%
3248342 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 21.0 3.04e-01 79.4% 83.1%
3214149 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 22.0 3.25e-01 81.3% 92.3%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 35.0 2.98e-01 70.3% 69.8%
5077504 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.51 41.0 3.26e-01 87.1% 95.7%
5001118 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.50 37.0 3.65e-01 84.5% 70.9%
D3 high residues 264-325
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 47.0 4.35e-01 91.9% 92.4%
2qtlA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 3.89e-01 100.0% 73.8%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.52 35.0 2.46e-01 91.9% 20.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705119 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.79 68.0 4.70e-01 96.8% 98.0%
3333792 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.76 68.0 4.87e-01 100.0% 97.7%
3277346 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.76 67.0 4.85e-01 100.0% 97.1%
3272949 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.75 65.0 4.49e-01 96.8% 91.7%
3742736 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.75 66.0 4.24e-01 100.0% 94.9%
4995739 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.74 64.0 4.67e-01 95.2% 100.0%
3701791 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.74 66.0 4.63e-01 100.0% 99.5%
3936171 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.74 65.0 4.18e-01 100.0% 98.6%
3496730 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.73 65.0 3.98e-01 100.0% 95.4%
57665 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.72 64.0 4.59e-01 100.0% 84.8%
3598489 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.72 63.0 4.73e-01 100.0% 99.4%
4113883 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.71 55.0 3.72e-01 83.9% 33.2%
4622747 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.71 63.0 3.90e-01 100.0% 39.7%
4975019 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.70 61.0 4.59e-01 95.2% 99.3%
3714076 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.69 57.0 4.13e-01 91.9% 100.0%
3716733 4970.1.1.2 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.67 53.0 3.29e-01 88.7% 100.0%
3888427 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 44.0 3.47e-01 100.0% 43.1%
5068989 325.1.8.6 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N_2 0.54 33.0 3.51e-01 96.8% 72.0%