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ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00107
Bact-VirALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00107
Identity
- Kingdom:
- phage
Quality
76.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 167-229
D2
medium
residues 5-55
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qr0A02 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.80 | 56.0 | 4.43e-01 | 74.5% | 36.9% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.73 | 54.0 | 5.17e-01 | 78.4% | 69.5% |
| 3nynA03 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.69 | 60.0 | 5.16e-01 | 100.0% | 66.7% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.68 | 50.0 | 3.89e-01 | 80.4% | 35.9% |
| 2vx2G02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.67 | 54.0 | 5.37e-01 | 92.2% | 85.5% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.63 | 43.0 | 3.18e-01 | 72.5% | 26.4% |
| 1m2vB01 | 1.20.120.730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain | 0.62 | 50.0 | 3.67e-01 | 100.0% | 78.7% |
| 2ntxA02 | 1.20.58.1310 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 2 | 0.62 | 49.0 | 3.91e-01 | 86.3% | 43.7% |
| 2qv2A02 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.62 | 52.0 | 3.75e-01 | 100.0% | 35.8% |
| 1qycA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.62 | 48.0 | 3.64e-01 | 84.3% | 62.5% |
| 1jxzC02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.61 | 49.0 | 4.71e-01 | 94.1% | 80.0% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 4.21e-01 | 90.2% | 81.7% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.60 | 49.0 | 4.78e-01 | 94.1% | 81.0% |
| 8bykA01 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.60 | 51.0 | 3.01e-01 | 98.0% | 39.0% |
| 4og1A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.60 | 48.0 | 4.65e-01 | 94.1% | 81.0% |
| 4akrA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.58 | 44.0 | 3.70e-01 | 92.2% | 75.5% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.58 | 47.0 | 4.53e-01 | 94.1% | 81.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3183519 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.78 | 63.0 | 6.20e-01 | 88.2% | 87.3% |
| 148414 | 605.4.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC | 0.66 | 54.0 | 5.55e-01 | 90.2% | 98.0% |
| 3998933 | 101.1.2.160 ↗ | alpha arrays › HTH › HTH › winged helix domain › BLACT_WH | 0.65 | 53.0 | 5.18e-01 | 88.2% | 89.1% |
| 3336158 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.63 | 53.0 | 3.86e-01 | 98.0% | 65.5% |
| 3288130 | 604.17.1.0 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like | 0.62 | 53.0 | 5.20e-01 | 94.1% | 89.1% |
| 3490929 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.60 | 48.0 | 3.10e-01 | 98.0% | 54.8% |
D3
medium
residues 89-137
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2grjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 44.0 | 2.95e-01 | 71.4% | 17.9% |
| 1mkmA03 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.62 | 52.0 | 3.63e-01 | 100.0% | 38.4% |
| 2ijeS00 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.61 | 46.0 | 3.00e-01 | 83.7% | 36.3% |
| 1b96A00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.58 | 47.0 | 3.09e-01 | 93.9% | 82.4% |
| 1hqoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 42.0 | 3.24e-01 | 93.9% | 31.3% |
| 1g0hA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 41.0 | 3.25e-01 | 95.9% | 94.9% |
| 2cshA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.54 | 35.0 | 2.91e-01 | 100.0% | 35.6% |
| 4at7B02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 39.0 | 2.77e-01 | 87.8% | 51.3% |
| 7wz5A01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 44.0 | 3.18e-01 | 100.0% | 33.8% |
| 1t3qC03 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.51 | 39.0 | 3.20e-01 | 93.9% | 80.2% |
| 2cq8A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.51 | 36.0 | 3.15e-01 | 77.6% | 93.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 51.0 | 4.28e-01 | 89.8% | 95.6% |
| 5004691 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.65 | 47.0 | 3.12e-01 | 77.6% | 20.5% |
| 3920591 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.60 | 49.0 | 2.99e-01 | 91.8% | 14.6% |
| 5000602 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.59 | 50.0 | 3.63e-01 | 100.0% | 89.7% |
| 4888417 | 109.3.1.173 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, TRP_2, Ank_2, Ank_3 | 0.57 | 42.0 | 3.03e-01 | 83.7% | 25.5% |
| 1318717 | 3896.1.1.1 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CTP_transf_1 | 0.55 | 40.0 | 2.57e-01 | 79.6% | 41.3% |
| 5046115 | 109.3.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 | 0.55 | 41.0 | 2.86e-01 | 81.6% | 41.8% |
| 3468754 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.55 | 40.0 | 3.87e-01 | 83.7% | 88.3% |