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ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00160
Bact-VirALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00160
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-85_250-264
Domain cluster:
rep: IMGVR_UViG_3300009518_000117-3300009518-Ga0116128_100048915__D349-439
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.74 | 66.0 | 4.60e-01 | 98.0% | 90.7% |
| 3lhxA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.72 | 64.0 | 4.56e-01 | 100.0% | 89.3% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.71 | 65.0 | 4.85e-01 | 100.0% | 98.8% |
| 1qlwA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 58.0 | 4.16e-01 | 100.0% | 81.4% |
| 2csuA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.65 | 57.0 | 4.87e-01 | 100.0% | 89.2% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.63 | 48.0 | 3.39e-01 | 82.8% | 93.0% |
| 1rvkA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.61 | 54.0 | 4.02e-01 | 100.0% | 74.2% |
| 1j79A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 54.0 | 3.77e-01 | 100.0% | 78.1% |
| 6jsjA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 53.0 | 3.92e-01 | 100.0% | 82.3% |
| 2oktA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.60 | 54.0 | 4.26e-01 | 100.0% | 84.0% |
| 2oogD00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.60 | 51.0 | 3.76e-01 | 93.9% | 51.9% |
| 2v82A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 51.0 | 4.09e-01 | 97.0% | 86.3% |
| 4muoA02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.59 | 51.0 | 3.90e-01 | 98.0% | 87.0% |
| 4l07A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.58 | 50.0 | 4.03e-01 | 98.0% | 89.9% |
| 3i6sA03 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.58 | 45.0 | 4.18e-01 | 84.8% | 90.8% |
| 1gg4A03 | 3.40.1390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain | 0.58 | 44.0 | 4.80e-01 | 83.8% | 100.0% |
| 1nbaB00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.58 | 50.0 | 3.78e-01 | 98.0% | 75.8% |
| 3i10A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.57 | 50.0 | 3.68e-01 | 100.0% | 86.3% |
| 1nf8A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.57 | 48.0 | 3.89e-01 | 97.0% | 86.5% |
| 3mz2A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.56 | 49.0 | 3.61e-01 | 100.0% | 97.5% |
| 3o63A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 49.0 | 3.86e-01 | 98.0% | 53.3% |
| 2iv2X02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 45.0 | 3.45e-01 | 97.0% | 71.3% |
| 2a67B00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.53 | 44.0 | 3.81e-01 | 93.9% | 99.4% |
| 4c12A01 | 3.40.1390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain | 0.51 | 45.0 | 4.55e-01 | 96.0% | 96.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938738 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.73 | 66.0 | 5.02e-01 | 100.0% | 99.6% |
| 5027729 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.72 | 65.0 | 5.12e-01 | 100.0% | 99.0% |
| 5044225 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.71 | 65.0 | 5.27e-01 | 100.0% | 95.6% |
| 4933468 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.71 | 56.0 | 4.90e-01 | 84.8% | 93.3% |
| 5018248 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.70 | 63.0 | 5.02e-01 | 100.0% | 93.5% |
| 4886165 | 2003.1.8.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › MurCD/PglD N-terminal domain-like › Mur_ligase | 0.70 | 45.0 | 5.38e-01 | 73.7% | 100.0% |
| 5056175 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.69 | 57.0 | 4.58e-01 | 88.9% | 98.9% |
| 3271276 | 2007.1.3.27 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Glyco_tran_10_N | 0.68 | 61.0 | 5.04e-01 | 100.0% | 82.9% |
| 5047030 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.67 | 59.0 | 4.79e-01 | 100.0% | 95.4% |
| 4988970 | 7545.1.1.0 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like | 0.66 | 48.0 | 4.84e-01 | 76.8% | 92.9% |
| 4219475 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.66 | 59.0 | 4.68e-01 | 100.0% | 88.7% |
| 4996536 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.65 | 57.0 | 4.36e-01 | 97.0% | 85.8% |
| 3503303 | 2007.1.3.27 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Glyco_tran_10_N | 0.64 | 58.0 | 4.90e-01 | 100.0% | 78.8% |
| 5000989 | 2008.1.1.70 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_BsaWI | 0.64 | 57.0 | 4.45e-01 | 100.0% | 67.0% |
| 3659621 | 2002.1.1.44 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase | 0.63 | 57.0 | 4.13e-01 | 100.0% | 83.2% |
| 4947512 | 2003.1.10.10 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › DUF1246 | 0.63 | 46.0 | 4.45e-01 | 99.0% | 69.1% |
| 4352540 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.61 | 40.0 | 4.15e-01 | 93.9% | 70.5% |
| 4351053 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.59 | 51.0 | 4.37e-01 | 98.0% | 75.1% |
| 3738223 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.59 | 51.0 | 4.48e-01 | 100.0% | 86.9% |
| 3265700 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.59 | 51.0 | 4.10e-01 | 97.0% | 84.5% |
| 3519301 | 2493.1.1.4 ↗ | a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like › DRTGG | 0.58 | 44.0 | 4.09e-01 | 80.8% | 88.8% |
| 3959613 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 51.0 | 3.78e-01 | 100.0% | 81.1% |
| 2543637 | 2003.1.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Ldh_1_N | 0.57 | 36.0 | 4.13e-01 | 76.8% | 90.0% |
| 4955644 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.57 | 47.0 | 3.87e-01 | 90.9% | 99.5% |
| 4206410 | 2493.1.1.4 ↗ | a/b three-layered sandwiches › MurF and HprK N-domain-like › MurF and HprK N-domain-like › MurF and HprK N-domain-like › DRTGG | 0.57 | 43.0 | 4.09e-01 | 81.8% | 80.8% |
| 3507324 | 2007.1.3.27 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Glyco_tran_10_N | 0.56 | 47.0 | 4.48e-01 | 89.9% | 92.2% |
| 1066208 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.56 | 49.0 | 3.42e-01 | 100.0% | 75.9% |
| 4862898 | 7512.1.1.15 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyphos_transf | 0.56 | 51.0 | 4.22e-01 | 100.0% | 75.1% |
| 3182433 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.55 | 47.0 | 3.84e-01 | 98.0% | 99.0% |
| 3297251 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.53 | 44.0 | 3.21e-01 | 93.9% | 36.8% |
| 3312830 | 207.1.1.95 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 | 0.51 | 44.0 | 3.44e-01 | 97.0% | 54.5% |
D2
high
residues 102-247
Domain cluster:
rep: BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00401__D182-218_253-390
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00852.27 best | Glyco_transf_10 | 32.7 | 8.40e-08 | 87.0% | 39.6% |