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ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00222

Bact-Vir

ALT_09252017_20_scaffold_146_prodigal-single.1__X__X__00222

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 50.0 5.25e-01 85.9% 89.5%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 56.0 4.44e-01 94.1% 64.2%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 53.0 4.96e-01 87.1% 85.4%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 53.0 4.52e-01 100.0% 54.1%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 51.0 5.29e-01 83.5% 92.4%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.64 37.0 3.37e-01 100.0% 44.0%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 46.0 3.86e-01 94.1% 44.5%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 55.0 4.33e-01 100.0% 66.1%
3i2nA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 3.26e-01 88.2% 31.3%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.43e-01 90.6% 98.3%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 27.0 3.71e-01 90.6% 92.1%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.59 43.0 2.81e-01 90.6% 16.9%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 53.0 4.49e-01 100.0% 75.4%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.59 42.0 3.41e-01 74.1% 96.3%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 52.0 3.92e-01 100.0% 57.9%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 52.0 4.26e-01 100.0% 67.1%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.59 44.0 4.40e-01 89.4% 76.7%
3gkeA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.59 53.0 3.95e-01 100.0% 61.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.58 46.0 4.41e-01 88.2% 83.3%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 47.0 3.80e-01 100.0% 46.3%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 45.0 3.98e-01 90.6% 82.2%
3qc2B00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 44.0 2.96e-01 85.9% 28.0%
4ds2B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 47.0 3.83e-01 90.6% 49.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 42.0 4.34e-01 87.1% 87.3%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 49.0 4.15e-01 100.0% 72.0%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 3.97e-01 87.1% 82.4%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 4.33e-01 100.0% 81.3%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 3.59e-01 100.0% 58.4%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 46.0 3.86e-01 100.0% 65.9%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.55 48.0 4.34e-01 100.0% 97.4%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 46.0 3.74e-01 94.1% 50.0%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 49.0 3.89e-01 100.0% 53.2%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 3.85e-01 100.0% 64.2%
7fjlA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 44.0 3.34e-01 96.5% 93.8%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.54 29.0 3.11e-01 83.5% 60.3%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.94e-01 88.2% 30.4%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 38.0 2.91e-01 76.5% 42.4%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 38.0 2.95e-01 76.5% 99.5%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.59e-01 91.8% 50.3%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.75e-01 100.0% 72.0%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.79e-01 87.1% 23.9%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 44.0 3.54e-01 97.6% 47.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.86e-01 97.6% 91.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.94e-01 87.1% 87.2%
2cjaA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 44.0 3.04e-01 100.0% 29.6%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.87e-01 85.9% 92.9%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.53e-01 95.3% 51.3%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.87e-01 100.0% 84.1%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 40.0 3.47e-01 90.6% 97.2%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 37.0 3.20e-01 81.2% 47.6%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3783256 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 63.0 4.91e-01 98.8% 74.1%
3211452 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.67 47.0 4.73e-01 100.0% 73.8%
3930653 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.65 52.0 5.10e-01 87.1% 87.8%
5005014 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 58.0 4.22e-01 100.0% 53.5%
6327 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.63 46.0 3.86e-01 94.1% 44.5%
3628966 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.63 56.0 4.14e-01 100.0% 54.2%
3235095 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.62 55.0 4.03e-01 100.0% 53.5%
4878713 331.3.1.42 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Mtb12_C 0.62 48.0 4.59e-01 84.7% 100.0%
5009761 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.61 51.0 4.26e-01 95.3% 53.1%
4582733 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 49.0 4.38e-01 91.8% 80.8%
4318843 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.61 55.0 4.53e-01 100.0% 56.6%
3518863 221.1.2.16 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.61 55.0 5.14e-01 100.0% 95.2%
4577518 9.1.1.3 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › His_binding 0.60 51.0 4.05e-01 94.1% 52.8%
5049731 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 52.0 4.26e-01 97.6% 51.9%
144571 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.60 54.0 4.28e-01 100.0% 63.1%
3854043 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.60 53.0 3.97e-01 100.0% 62.3%
3953070 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.59 47.0 4.35e-01 87.1% 96.4%
3474976 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.59 52.0 4.58e-01 100.0% 66.2%
1715835 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.59 53.0 4.49e-01 100.0% 75.4%
4934107 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.59 51.0 4.29e-01 100.0% 76.8%
4424313 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.59 52.0 4.99e-01 100.0% 88.0%
3343085 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.59 52.0 4.25e-01 100.0% 71.9%
141164 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.59 52.0 4.31e-01 100.0% 69.7%
4984404 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.58 51.0 4.31e-01 100.0% 74.3%
5011158 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.58 49.0 4.14e-01 100.0% 54.9%
4966333 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 41.0 4.58e-01 84.7% 98.5%
3933100 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 30.0 3.33e-01 84.7% 61.4%
3677799 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.58 51.0 4.04e-01 100.0% 83.9%
4024746 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 50.0 3.75e-01 100.0% 64.8%
134926 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 50.0 4.14e-01 100.0% 66.7%
3534484 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.57 50.0 3.81e-01 100.0% 57.7%
3645476 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.57 33.0 3.21e-01 80.0% 47.0%
3954938 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.32e-01 94.1% 92.3%
4682108 243.3.1.5 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.57 44.0 4.44e-01 97.6% 83.5%
3789706 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 50.0 4.06e-01 100.0% 62.9%
4330244 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 51.0 4.70e-01 98.8% 96.3%
3981106 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 50.0 4.20e-01 100.0% 68.7%
3608674 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 50.0 4.05e-01 100.0% 66.3%
3283627 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.56 48.0 4.10e-01 100.0% 68.0%
3959606 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 48.0 3.91e-01 100.0% 49.1%
3282719 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.56 49.0 4.01e-01 100.0% 64.2%
4976136 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 45.0 4.38e-01 98.8% 78.9%
3319754 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.56 48.0 3.98e-01 100.0% 51.9%
4289286 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.56 49.0 4.13e-01 100.0% 70.0%
3018445 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 48.0 3.59e-01 100.0% 58.5%
3827979 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.56 49.0 4.20e-01 100.0% 61.2%
3812932 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.56 48.0 3.92e-01 100.0% 78.2%
3284488 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.55 48.0 4.12e-01 100.0% 71.7%
3895620 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 48.0 3.94e-01 100.0% 64.8%
3619070 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 47.0 3.93e-01 100.0% 64.8%
3355101 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.55 44.0 3.35e-01 88.2% 35.3%
5055610 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.55 47.0 4.07e-01 95.3% 84.4%
3920188 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.55 49.0 3.57e-01 100.0% 58.7%
5074212 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.55 48.0 4.42e-01 100.0% 76.4%
4941364 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.54 42.0 3.97e-01 89.4% 68.6%
3314422 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 36.0 3.87e-01 97.6% 84.3%
4117472 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.53 46.0 3.81e-01 100.0% 66.3%
4026812 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 45.0 3.76e-01 100.0% 64.4%
5057130 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.53 41.0 3.66e-01 85.9% 81.6%
5013094 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 42.0 3.42e-01 88.2% 73.3%
4160858 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.52 44.0 3.77e-01 97.6% 93.3%
3965583 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.52 45.0 3.89e-01 100.0% 73.6%
3712993 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 42.0 4.43e-01 91.8% 98.7%
3183643 243.9.1.4 a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › NuiA_2 0.51 45.0 4.10e-01 100.0% 71.4%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.51 39.0 2.85e-01 85.9% 30.9%
4496856 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 43.0 2.95e-01 100.0% 37.4%
1715838 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.51 44.0 3.69e-01 100.0% 67.1%
3603042 241.1.1.27 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27355 0.51 40.0 3.30e-01 91.8% 44.0%
4680442 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 43.0 3.51e-01 96.5% 50.3%