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ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00044

Bact-Vir

ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00044

Identity

Kingdom:
phage

Quality

94.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-73_160-175
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.62 53.0 4.39e-01 96.6% 69.3%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.62 53.0 4.40e-01 97.8% 70.1%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 52.0 4.28e-01 97.8% 69.0%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.59 51.0 4.21e-01 96.6% 68.7%
2lstA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 41.0 3.66e-01 73.0% 72.3%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 35.0 2.77e-01 100.0% 27.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 30.0 3.44e-01 87.6% 72.3%
3nr5A00 3.40.1000.50 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Repressor of RNA polymerase III transcription Maf1 0.54 47.0 3.92e-01 97.8% 93.6%
3dbaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 46.0 3.82e-01 98.9% 77.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 30.0 3.36e-01 84.3% 73.0%
2v7bA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.50 40.0 3.94e-01 87.6% 96.9%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.50 29.0 3.36e-01 80.9% 83.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965445 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.64 52.0 4.32e-01 91.0% 94.5%
4606082 812.1.1.1 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.63 37.0 4.35e-01 74.2% 90.9%
3966635 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 53.0 4.38e-01 96.6% 66.5%
4623391 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.62 53.0 4.38e-01 97.8% 68.2%
4190453 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.62 53.0 4.37e-01 96.6% 70.3%
4565829 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.61 53.0 4.23e-01 96.6% 62.8%
2712978 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.60 51.0 4.17e-01 96.6% 65.1%
5072662 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 42.0 3.71e-01 75.3% 74.1%
4267096 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.59 50.0 4.08e-01 95.5% 67.4%
3974768 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 50.0 4.24e-01 96.6% 67.1%
3808479 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.59 35.0 4.09e-01 84.3% 86.7%
3704673 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 35.0 3.01e-01 92.1% 36.4%
4257110 256.1.1.11 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF2536 0.57 34.0 4.03e-01 91.0% 88.3%
4980668 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 47.0 3.36e-01 96.6% 39.0%
3269303 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.55 38.0 3.37e-01 71.9% 52.3%
4321644 256.1.1.1 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.55 33.0 3.60e-01 85.4% 74.3%
4857310 225.1.1.6 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 0.54 38.0 3.48e-01 74.2% 91.6%
3922189 601.48.1.0 alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.52 32.0 3.54e-01 91.0% 78.6%
1125751 4086.1.1.1 a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.51 32.0 3.26e-01 73.0% 64.8%
5080307 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.50 27.0 3.29e-01 82.0% 95.6%
4056691 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 34.0 3.09e-01 92.1% 51.7%
D2 medium residues 74-159
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eqeA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.78 56.0 4.55e-01 100.0% 41.0%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 47.0 4.36e-01 100.0% 50.5%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 49.0 3.91e-01 100.0% 34.9%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 51.0 4.56e-01 100.0% 51.7%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 47.0 4.59e-01 100.0% 59.6%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 50.0 3.99e-01 100.0% 37.2%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 47.0 4.75e-01 100.0% 65.9%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 46.0 4.34e-01 100.0% 54.4%
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 48.0 4.09e-01 98.8% 44.1%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 46.0 4.08e-01 100.0% 46.7%
3bb6C00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 55.0 4.98e-01 100.0% 63.4%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 49.0 4.40e-01 100.0% 52.9%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 48.0 3.83e-01 100.0% 37.8%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.69 51.0 4.22e-01 100.0% 44.7%
1s4cC00 2.60.120.370 Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL 0.68 58.0 4.83e-01 97.7% 54.4%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 51.0 3.93e-01 100.0% 37.2%
1ft9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 45.0 3.96e-01 98.8% 45.8%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 48.0 4.26e-01 100.0% 53.3%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.31e-01 100.0% 57.3%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 44.0 3.86e-01 100.0% 48.8%
7eehA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.61 53.0 3.82e-01 100.0% 33.3%
3m7aA01 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.59 45.0 3.85e-01 100.0% 51.5%
2vveA01 2.60.120.770 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 4.13e-01 100.0% 72.0%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 52.0 4.43e-01 100.0% 71.7%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.55 45.0 4.11e-01 100.0% 66.7%
2p3yA04 2.60.120.600 Mainly Beta › Sandwich › Jelly Rolls › Domain of unknown function DUF1214, C-terminal domain 0.55 49.0 3.88e-01 100.0% 63.4%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 47.0 4.64e-01 100.0% 88.2%
2lsmA00 3.40.5.70 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › DNA packaging chaperone protein FI, C-terminal beta-strand domain 0.53 28.0 3.16e-01 97.7% 65.6%
2wanA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.76e-01 89.5% 66.7%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.92e-01 100.0% 69.7%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 30.0 3.27e-01 97.7% 70.1%
1yllC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 4.03e-01 100.0% 73.4%
6ibkA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 41.0 3.99e-01 100.0% 79.4%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 28.0 3.23e-01 100.0% 74.6%
2e8yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.62e-01 89.5% 69.5%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.82e-01 98.8% 71.4%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.67e-01 89.5% 69.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017936 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.75 50.0 4.48e-01 100.0% 51.3%
4230092 10.12.1.28 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.73 47.0 4.22e-01 100.0% 47.5%
3408923 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.73 50.0 3.98e-01 100.0% 37.2%
None 0.72 47.0 3.75e-01 100.0% 33.3%
3367533 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.71 49.0 3.70e-01 100.0% 31.0%
3987543 10.12.1.18 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 0.70 61.0 5.06e-01 100.0% 55.3%
4031118 10.12.1.100 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C 0.70 49.0 4.40e-01 100.0% 52.9%
5021913 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.68 43.0 4.24e-01 84.9% 61.1%
3944453 10.12.1.18 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 0.67 60.0 4.97e-01 100.0% 56.7%
4004446 10.12.1.18 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF386 0.67 59.0 4.92e-01 100.0% 56.1%
3710431 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.64 48.0 4.68e-01 100.0% 71.6%
4528208 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.64 42.0 4.33e-01 98.8% 72.5%
3927338 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.62 40.0 2.61e-01 100.0% 14.4%
4812688 10.12.1.43 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-Fe_Oxy_2 0.61 54.0 4.44e-01 100.0% 54.2%
4587586 10.12.1.15 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ARD 0.61 47.0 3.63e-01 100.0% 38.9%
3544069 10.4.1.28 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF27640 0.60 48.0 4.22e-01 100.0% 59.2%
5048013 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 46.0 4.45e-01 100.0% 75.8%
3276836 10.4.1.25 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF26736 0.55 42.0 4.30e-01 100.0% 85.7%
3716546 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 48.0 3.47e-01 100.0% 34.6%
3268381 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.59e-01 82.6% 62.1%
3411859 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 37.0 3.87e-01 97.7% 77.5%
3725690 10.12.1.19 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ureidogly_lyase 0.54 47.0 3.51e-01 100.0% 46.8%
5048739 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 41.0 3.68e-01 100.0% 56.2%
5056143 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.81e-01 87.2% 80.0%
3544841 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 43.0 3.79e-01 100.0% 58.5%
4000177 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.52 41.0 4.12e-01 100.0% 84.4%
3285287 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.52 43.0 3.99e-01 100.0% 69.6%
5036977 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.52 39.0 3.13e-01 100.0% 38.9%
5018960 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.52 42.0 3.79e-01 100.0% 62.4%
5043537 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 40.0 3.25e-01 100.0% 41.7%
5042033 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 39.0 3.28e-01 100.0% 45.6%
5052643 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 3.77e-01 100.0% 64.0%
4433561 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.51 44.0 3.76e-01 100.0% 59.3%
2605261 10.5.1.0 beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain 0.51 44.0 4.07e-01 100.0% 94.8%
3926311 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.71e-01 100.0% 69.1%
3742945 12.1.1.14 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C 0.50 36.0 3.71e-01 100.0% 82.5%
4988382 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 41.0 3.80e-01 100.0% 69.9%
3892939 10.32.1.229 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 0.50 44.0 3.78e-01 100.0% 62.9%