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ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00056
Bact-VirALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00056
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-100
Domain cluster:
rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00139__D5-107
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bf5A01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.61 | 42.0 | 3.51e-01 | 72.6% | 94.6% |
| 2ve7C01 | 1.10.418.60 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Nuf2 subunit | 0.58 | 51.0 | 4.28e-01 | 97.9% | 74.4% |
| 1bhdA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.58 | 46.0 | 4.43e-01 | 100.0% | 75.9% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 44.0 | 3.68e-01 | 82.1% | 64.5% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 41.0 | 3.63e-01 | 78.9% | 65.8% |
| 6bsbB00 | 6.10.140.600 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 27.0 | 3.42e-01 | 82.1% | 83.7% |
| 2ay1A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 39.0 | 3.74e-01 | 96.8% | 62.6% |
| 2hkvA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 39.0 | 3.51e-01 | 78.9% | 66.7% |
| 2r31A02 | 1.10.3580.10 | Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase | 0.53 | 39.0 | 3.33e-01 | 80.0% | 81.8% |
| 2fbaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 40.0 | 2.55e-01 | 82.1% | 51.4% |
| 2iw3A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 2.90e-01 | 76.8% | 33.8% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 39.0 | 3.54e-01 | 81.1% | 69.0% |
| 4nogA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 43.0 | 3.58e-01 | 100.0% | 53.2% |
| 2oikA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.50 | 37.0 | 3.29e-01 | 85.3% | 53.2% |
| 6m20C01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.50 | 41.0 | 2.70e-01 | 91.6% | 86.2% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 34.0 | 3.74e-01 | 88.4% | 88.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2390433 | 602.3.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain › T6SS_VasE | 0.67 | 60.0 | 5.51e-01 | 100.0% | 95.2% |
| 3972514 | 601.7.1.23 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF294_C | 0.62 | 48.0 | 4.20e-01 | 82.1% | 96.4% |
| 3615389 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 43.0 | 3.57e-01 | 72.6% | 81.8% |
| 3520908 | 109.4.1.2116 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30807 | 0.58 | 40.0 | 2.53e-01 | 71.6% | 27.2% |
| 3875361 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.57 | 45.0 | 3.78e-01 | 85.3% | 86.7% |
| 3695922 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.57 | 50.0 | 4.63e-01 | 100.0% | 92.8% |
| 3847690 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.56 | 44.0 | 3.73e-01 | 85.3% | 88.1% |
| 3706157 | 601.15.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) › PA28_C | 0.55 | 44.0 | 3.34e-01 | 86.3% | 82.6% |
| 3183530 | 109.4.1.1465 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, TPR_IPO11 | 0.55 | 38.0 | 2.16e-01 | 72.6% | 9.8% |
| 3781238 | 604.5.1.31 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 | 0.53 | 42.0 | 2.98e-01 | 89.5% | 73.5% |
| 3766780 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.53 | 40.0 | 3.50e-01 | 81.1% | 77.9% |
| 4079863 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 41.0 | 3.92e-01 | 100.0% | 75.5% |
| 4322682 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.51 | 38.0 | 2.62e-01 | 78.9% | 32.9% |
| 3440506 | 109.4.1.541 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4220 | 0.51 | 35.0 | 2.69e-01 | 72.6% | 43.3% |
| 3205716 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.50 | 35.0 | 2.90e-01 | 72.6% | 85.9% |
D2
high
residues 111-300
Domain cluster:
rep: IMGVR_UViG_3300035145_002450-3300035145-Ga0373595_0009153_3868_5049__D175-392
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dzgA00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 34.0 | 4.29e-01 | 90.0% | 89.4% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.61 | 27.0 | 3.23e-01 | 74.2% | 60.0% |
| 1w0nA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 31.0 | 3.83e-01 | 100.0% | 76.7% |
| 3m5gA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.60 | 32.0 | 3.12e-01 | 100.0% | 44.2% |
| 7neaA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.58 | 29.0 | 3.51e-01 | 78.9% | 71.9% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.58 | 41.0 | 4.72e-01 | 93.7% | 98.6% |
| 1p8jA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 38.0 | 4.46e-01 | 92.1% | 94.7% |
| 1g43A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.58 | 41.0 | 4.42e-01 | 100.0% | 85.6% |
| 2h6oA02 | 2.60.40.2810 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 4.45e-01 | 98.9% | 91.6% |
| 2e26A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 38.0 | 3.70e-01 | 100.0% | 62.7% |
| 5hbaA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 37.0 | 4.39e-01 | 94.2% | 100.0% |
| 3pijA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.53 | 38.0 | 4.21e-01 | 100.0% | 93.3% |
| 1lfwA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 30.0 | 3.84e-01 | 92.6% | 100.0% |
| 1a2vA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 43.0 | 3.29e-01 | 87.4% | 78.1% |
| 4i5sA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 29.0 | 3.69e-01 | 75.8% | 100.0% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.74e-01 | 93.7% | 88.3% |
| 1tnrA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 35.0 | 3.98e-01 | 99.5% | 90.3% |
| 4fffA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.51 | 36.0 | 4.00e-01 | 100.0% | 88.9% |
| 1uhvA01 | 2.60.40.1500 | Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 | 0.51 | 30.0 | 3.32e-01 | 92.6% | 70.5% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 40.0 | 4.26e-01 | 94.2% | 95.2% |
| 1pgsA02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 43.0 | 4.47e-01 | 98.4% | 98.3% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025374 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.70 | 39.0 | 4.68e-01 | 99.5% | 80.8% |
| 4011054 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.70 | 43.0 | 5.21e-01 | 100.0% | 92.8% |
| 4951436 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.68 | 38.0 | 4.14e-01 | 100.0% | 65.2% |
| 4103741 | 10.32.1.19 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC | 0.64 | 36.0 | 4.75e-01 | 90.5% | 100.0% |
| 4941983 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.64 | 41.0 | 4.69e-01 | 100.0% | 86.4% |
| 3396144 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.63 | 38.0 | 4.25e-01 | 100.0% | 75.9% |
| 3825274 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.63 | 37.0 | 3.99e-01 | 92.6% | 64.8% |
| 4942975 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.63 | 38.0 | 4.91e-01 | 91.6% | 100.0% |
| 3804459 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.63 | 36.0 | 4.23e-01 | 100.0% | 78.5% |
| 3482650 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 40.0 | 4.31e-01 | 100.0% | 75.6% |
| 5083968 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.62 | 40.0 | 4.90e-01 | 90.0% | 100.0% |
| 3275295 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.61 | 38.0 | 4.66e-01 | 92.6% | 96.7% |
| 4662876 | 10.32.1.25 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FlhE | 0.61 | 37.0 | 4.52e-01 | 92.1% | 95.0% |
| 3879285 | 10.4.1.23 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 | 0.61 | 35.0 | 4.26e-01 | 92.1% | 88.3% |
| 3893165 | 10.4.1.23 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 | 0.60 | 34.0 | 4.25e-01 | 91.6% | 90.4% |
| 3523714 | 10.4.1.23 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CDCP1_CUB_6 | 0.60 | 34.0 | 4.22e-01 | 92.1% | 87.5% |
| 5007276 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.60 | 35.0 | 4.01e-01 | 99.5% | 77.1% |
| 3723511 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.59 | 37.0 | 4.43e-01 | 100.0% | 92.8% |
| 4970968 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.59 | 34.0 | 4.34e-01 | 89.5% | 95.6% |
| 2100899 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 45.0 | 4.82e-01 | 99.5% | 93.8% |
| 3206484 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.58 | 39.0 | 4.57e-01 | 97.9% | 97.7% |
| 3241643 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.58 | 31.0 | 4.15e-01 | 93.2% | 98.0% |
| 3314257 | 10.32.1.193 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MP | 0.57 | 42.0 | 4.35e-01 | 94.2% | 80.6% |
| 3538609 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.57 | 39.0 | 4.35e-01 | 92.6% | 89.7% |
| 3626422 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 41.0 | 4.57e-01 | 100.0% | 94.7% |
| 4968966 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 35.0 | 4.26e-01 | 93.2% | 96.0% |
| 3906025 | 10.32.1.189 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CAND6-7_N | 0.55 | 44.0 | 4.61e-01 | 100.0% | 92.9% |
| 3769357 | 10.1.1.69 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CAND6-7_N | 0.55 | 45.0 | 4.68e-01 | 100.0% | 94.8% |
| 3895304 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.53 | 37.0 | 3.72e-01 | 93.7% | 67.7% |
| 4380019 | 10.32.1.94 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CDC50 | 0.53 | 39.0 | 4.23e-01 | 97.9% | 90.7% |
| 3714769 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.52 | 34.0 | 3.95e-01 | 93.2% | 90.0% |
| 3996623 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 22.0 | 3.16e-01 | 74.2% | 83.3% |
| 3884618 | 10.32.1.225 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF31127 | 0.51 | 40.0 | 4.11e-01 | 94.2% | 86.1% |
| 1180 | 10.2.1.47 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › N-glycanase_C | 0.50 | 43.0 | 4.48e-01 | 98.4% | 98.9% |
| 3407663 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 34.0 | 3.84e-01 | 100.0% | 90.3% |