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ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00072
Bact-VirALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00072
Identity
- Kingdom:
- phage
Quality
58.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 240-332
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.66 | 37.0 | 3.38e-01 | 100.0% | 41.3% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.59 | 37.0 | 3.77e-01 | 77.4% | 64.0% |
| 3q45A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 38.0 | 3.45e-01 | 72.0% | 92.1% |
| 2qddA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 37.0 | 3.31e-01 | 73.1% | 90.0% |
| 2pgwA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 36.0 | 3.10e-01 | 72.0% | 93.3% |
| 3t4nA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 33.0 | 3.30e-01 | 78.5% | 61.5% |
| 2oktA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 36.0 | 3.27e-01 | 72.0% | 93.8% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.52 | 30.0 | 3.43e-01 | 100.0% | 81.0% |
| 3qldA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 36.0 | 3.09e-01 | 72.0% | 87.5% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 36.0 | 3.25e-01 | 73.1% | 94.6% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.85e-01 | 100.0% | 67.5% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 35.0 | 3.07e-01 | 71.0% | 94.4% |
| 3cyjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 35.0 | 3.23e-01 | 71.0% | 95.1% |
| 2oz8A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 36.0 | 3.20e-01 | 72.0% | 88.4% |
| 4aq1A02 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.30e-01 | 89.2% | 64.8% |
D2
medium
residues 6-41
D3
medium
residues 81-155_171-186
D4
medium
residues 644-705
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2erfA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 63.0 | 4.31e-01 | 100.0% | 40.2% |
| 3o0wA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 59.0 | 3.99e-01 | 95.2% | 27.8% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 44.0 | 3.79e-01 | 82.3% | 44.3% |
| 1n7oA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.65 | 58.0 | 5.19e-01 | 98.4% | 70.6% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.65 | 37.0 | 3.12e-01 | 72.6% | 34.0% |
| 2wsuB02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 52.0 | 4.03e-01 | 95.2% | 40.3% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.63 | 54.0 | 3.44e-01 | 93.5% | 73.2% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.62 | 45.0 | 3.61e-01 | 95.2% | 39.2% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 44.0 | 3.70e-01 | 82.3% | 44.4% |
| 1t9mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 50.0 | 3.52e-01 | 93.5% | 99.5% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 49.0 | 3.74e-01 | 93.5% | 42.2% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 50.0 | 3.91e-01 | 96.8% | 45.3% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.57 | 47.0 | 4.10e-01 | 90.3% | 90.2% |
| 3fbxA00 | 3.60.60.30 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › | 0.57 | 49.0 | 2.92e-01 | 98.4% | 30.8% |
| 2zzjA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 48.0 | 3.30e-01 | 98.4% | 44.1% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.56 | 43.0 | 3.34e-01 | 82.3% | 77.4% |
| 3khyA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 40.0 | 2.95e-01 | 95.2% | 25.9% |
| 2p2sA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 48.0 | 3.42e-01 | 98.4% | 68.9% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.54 | 41.0 | 3.35e-01 | 87.1% | 43.2% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.53 | 43.0 | 3.42e-01 | 96.8% | 42.3% |
| 3kxvA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.53 | 38.0 | 4.15e-01 | 88.7% | 98.0% |
| 3gdoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 44.0 | 3.14e-01 | 95.2% | 68.3% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.52 | 46.0 | 3.89e-01 | 100.0% | 65.7% |
| 2bmbA02 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.52 | 38.0 | 2.46e-01 | 79.0% | 31.4% |
| 2xzmE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 43.0 | 3.54e-01 | 91.9% | 56.0% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 35.0 | 3.67e-01 | 71.0% | 89.5% |
| 2rlpA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.52 | 40.0 | 3.98e-01 | 88.7% | 80.6% |
| 1ocsA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 40.0 | 3.23e-01 | 87.1% | 96.2% |
| 1bifA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 37.0 | 2.52e-01 | 74.2% | 86.9% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 38.0 | 3.10e-01 | 82.3% | 88.4% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 42.0 | 3.05e-01 | 90.3% | 31.5% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 2.58e-01 | 95.2% | 87.3% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 41.0 | 2.67e-01 | 95.2% | 30.2% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.50 | 36.0 | 3.41e-01 | 93.5% | 62.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4091170 | 10.1.1.3 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin | 0.70 | 59.0 | 3.82e-01 | 95.2% | 22.0% |
| 4877137 | 10.1.1.3 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin | 0.68 | 57.0 | 3.83e-01 | 95.2% | 26.3% |
| 3719596 | 77.1.1.3 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 | 0.65 | 54.0 | 4.01e-01 | 95.2% | 38.8% |
| 4988955 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.63 | 36.0 | 3.65e-01 | 75.8% | 55.0% |
| 3743138 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.63 | 51.0 | 4.19e-01 | 91.9% | 48.7% |
| 1562389 | 3308.2.1.0 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein | 0.62 | 46.0 | 3.18e-01 | 87.1% | 23.4% |
| 136977 | 243.1.1.20 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4878 | 0.61 | 44.0 | 3.70e-01 | 82.3% | 44.4% |
| 3926705 | 6129.1.1.9 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C | 0.59 | 53.0 | 3.81e-01 | 100.0% | 35.4% |
| 3512439 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.56 | 36.0 | 3.35e-01 | 85.5% | 50.0% |
| 4538466 | 3197.1.1.1 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N | 0.56 | 46.0 | 3.65e-01 | 91.9% | 46.2% |
| 1033236 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.56 | 44.0 | 4.18e-01 | 90.3% | 73.0% |
| 3502695 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.56 | 36.0 | 3.90e-01 | 90.3% | 82.0% |
| 3988431 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.56 | 43.0 | 3.15e-01 | 85.5% | 43.3% |
| 3518898 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.56 | 35.0 | 3.88e-01 | 79.0% | 86.7% |
| 3684661 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.53 | 45.0 | 3.42e-01 | 96.8% | 40.7% |
| 4948955 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 43.0 | 3.21e-01 | 90.3% | 57.3% |
| 3691938 | 219.1.1.17 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 | 0.52 | 40.0 | 2.40e-01 | 85.5% | 78.1% |
| 5022113 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.52 | 38.0 | 3.04e-01 | 95.2% | 35.9% |
| 3576376 | 7579.1.1.5 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 | 0.52 | 42.0 | 2.82e-01 | 90.3% | 58.8% |
| 3508875 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.51 | 35.0 | 3.12e-01 | 71.0% | 65.6% |
| 4418043 | 207.12.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Protein M antibody-binding region › Protein M antibody-binding region | 0.51 | 38.0 | 2.39e-01 | 83.9% | 37.3% |
| 3416068 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.51 | 41.0 | 3.27e-01 | 100.0% | 73.5% |
| 5048115 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.51 | 37.0 | 3.36e-01 | 93.5% | 54.7% |
| 3239745 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.51 | 41.0 | 2.70e-01 | 91.9% | 20.7% |
| 3928836 | 325.1.6.6 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26730 | 0.50 | 39.0 | 3.08e-01 | 91.9% | 53.8% |
| 3430385 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.50 | 43.0 | 3.46e-01 | 96.8% | 48.0% |
D5
medium
residues 956-1096