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ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00075
Bact-VirALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00075
Identity
- Kingdom:
- phage
Quality
69.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-51
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00006__D16-54
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18454.8 best | Mtd_N | 50.0 | 3.20e-13 | 81.4% | 89.2% |
D2
high
residues 75-203
Domain cluster:
rep: ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00075__D206-329
D3
high
residues 206-329
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zfdB00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.59 | 35.0 | 3.65e-01 | 98.4% | 62.1% |
| 3mjqA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 44.0 | 4.70e-01 | 95.2% | 93.5% |
| 2p3hA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.57 | 40.0 | 4.44e-01 | 96.8% | 90.8% |
| 3ewkA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 45.0 | 4.83e-01 | 99.2% | 100.0% |
| 4hh2B03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 43.0 | 4.73e-01 | 100.0% | 100.0% |
| 4hoiB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 46.0 | 4.83e-01 | 100.0% | 98.2% |
| 1bywA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 45.0 | 4.77e-01 | 97.6% | 100.0% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.56 | 33.0 | 3.74e-01 | 96.8% | 78.9% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 45.0 | 4.05e-01 | 99.2% | 62.5% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 36.0 | 3.77e-01 | 92.7% | 72.1% |
| 4mn5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 41.0 | 4.41e-01 | 97.6% | 93.2% |
| 2z6cA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 45.0 | 4.55e-01 | 100.0% | 90.1% |
| 3b33A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 41.0 | 4.34e-01 | 96.0% | 89.9% |
| 2gj3A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 43.0 | 4.44e-01 | 99.2% | 89.1% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 44.0 | 4.56e-01 | 100.0% | 91.5% |
| 1tp6A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 36.0 | 3.65e-01 | 97.6% | 66.7% |
| 2v0uA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 44.0 | 4.21e-01 | 100.0% | 74.7% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 37.0 | 3.25e-01 | 96.8% | 49.7% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.62e-01 | 100.0% | 66.9% |
| 5a67A00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 39.0 | 3.25e-01 | 99.2% | 46.1% |
| 5svgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 46.0 | 4.72e-01 | 99.2% | 100.0% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 3.93e-01 | 95.2% | 69.3% |
| 1p0zA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 4.37e-01 | 100.0% | 91.6% |
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 43.0 | 4.20e-01 | 95.2% | 89.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3067919 | 3077.1.1.1 ↗ | beta sandwiches › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › HmuY | 0.64 | 57.0 | 4.85e-01 | 97.6% | 99.0% |
| 224012 | 3077.1.1.3 ↗ | beta sandwiches › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › PF29636 | 0.63 | 57.0 | 5.20e-01 | 98.4% | 98.2% |
| 3177232 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.61 | 39.0 | 4.09e-01 | 97.6% | 70.4% |
| 4556248 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.60 | 47.0 | 3.73e-01 | 100.0% | 41.4% |
| 4958260 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.59 | 47.0 | 5.01e-01 | 100.0% | 100.0% |
| 3278559 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.58 | 39.0 | 3.48e-01 | 99.2% | 48.8% |
| 4950250 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.58 | 51.0 | 5.06e-01 | 99.2% | 92.3% |
| 2855565 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 38.0 | 4.28e-01 | 100.0% | 92.2% |
| 5049837 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.57 | 46.0 | 4.90e-01 | 100.0% | 99.1% |
| 4950857 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.57 | 44.0 | 4.45e-01 | 99.2% | 83.3% |
| 4959266 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.57 | 47.0 | 3.71e-01 | 99.2% | 42.3% |
| 4949896 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.57 | 43.0 | 4.34e-01 | 98.4% | 79.2% |
| 4930506 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.56 | 44.0 | 4.68e-01 | 100.0% | 94.5% |
| 3951048 | 331.4.1.17 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › ResB | 0.56 | 36.0 | 3.72e-01 | 98.4% | 65.8% |
| 3931349 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.56 | 34.0 | 3.33e-01 | 77.4% | 54.7% |
| 4980695 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 43.0 | 4.50e-01 | 100.0% | 92.7% |
| 5007802 | 331.4.1.36 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27851 | 0.55 | 31.0 | 3.75e-01 | 96.8% | 85.0% |
| 4959371 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 41.0 | 4.17e-01 | 100.0% | 79.2% |
| None | — | 0.54 | 45.0 | 4.38e-01 | 100.0% | 80.1% | |
| 3886734 | 331.4.1.7 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 | 0.54 | 38.0 | 3.48e-01 | 100.0% | 54.5% |
| 5002462 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 42.0 | 4.09e-01 | 100.0% | 77.0% |
| 3497967 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.53 | 45.0 | 4.25e-01 | 94.4% | 80.0% |
| 1018828 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 43.0 | 4.29e-01 | 91.1% | 84.1% |
| 4204465 | 881.1.1.36 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF25844 | 0.53 | 37.0 | 3.65e-01 | 98.4% | 65.9% |
| 3591181 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.52 | 38.0 | 3.05e-01 | 96.8% | 40.4% |
| 4208319 | 223.1.1.83 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_13 | 0.52 | 45.0 | 3.85e-01 | 95.2% | 67.3% |
| 3607351 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 38.0 | 3.68e-01 | 98.4% | 70.4% |
| 3579622 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.50 | 31.0 | 3.26e-01 | 99.2% | 67.3% |
| 5043799 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 34.0 | 3.52e-01 | 100.0% | 72.9% |
D4
high
residues 672-754
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 61.0 | 6.00e-01 | 100.0% | 83.1% |
| 1qexA02 | 2.60.120.640 | Mainly Beta › Sandwich › Jelly Rolls › gp9 | 0.72 | 65.0 | 6.06e-01 | 100.0% | 85.4% |
| 3dtnA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 44.0 | 3.43e-01 | 77.1% | 75.4% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 46.0 | 4.12e-01 | 100.0% | 59.8% |
| 1wdeA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 46.0 | 3.71e-01 | 90.4% | 82.8% |
| 2zuxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 3.44e-01 | 92.8% | 59.1% |
| 1qamA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 41.0 | 3.40e-01 | 80.7% | 84.1% |
| 2wnkA01 | 2.60.40.1320 | Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain | 0.55 | 40.0 | 3.64e-01 | 78.3% | 93.2% |
| 1pf3A03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 45.0 | 3.74e-01 | 90.4% | 79.9% |
| 4f7kA03 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 41.0 | 3.77e-01 | 84.3% | 85.1% |
| 3k3pA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 39.0 | 3.59e-01 | 85.5% | 59.5% |
| 2vrqA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 42.0 | 3.69e-01 | 90.4% | 93.9% |
| 3ho6B00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.52 | 45.0 | 3.34e-01 | 100.0% | 60.2% |
| 3jurA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.52 | 41.0 | 2.60e-01 | 89.2% | 16.2% |
| 1a4aA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 44.0 | 3.93e-01 | 100.0% | 95.3% |
| 2wnkA02 | 2.60.40.1320 | Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain | 0.52 | 42.0 | 3.91e-01 | 89.2% | 80.2% |
| 5u95B01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 37.0 | 2.96e-01 | 78.3% | 57.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1070458 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.73 | 66.0 | 5.27e-01 | 100.0% | 60.0% |
| 184462 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.72 | 65.0 | 5.14e-01 | 100.0% | 52.4% |
| 3830608 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.61 | 53.0 | 3.79e-01 | 100.0% | 56.4% |
| 4029280 | 3156.3.1.0 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family | 0.60 | 46.0 | 4.06e-01 | 84.3% | 96.9% |
| 4651440 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.59 | 46.0 | 4.26e-01 | 100.0% | 65.5% |
| 5067640 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.58 | 46.0 | 4.30e-01 | 90.4% | 91.8% |
| 3022615 | 3156.3.1.0 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family | 0.57 | 47.0 | 3.70e-01 | 92.8% | 77.8% |
| 4030260 | 3156.3.1.2 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › s48_45 | 0.56 | 45.0 | 3.84e-01 | 91.6% | 95.2% |
| 4979218 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.54 | 40.0 | 2.99e-01 | 79.5% | 64.3% |
| 3932687 | 2006.1.6.9 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Copine | 0.54 | 45.0 | 3.30e-01 | 94.0% | 52.5% |
| 3387957 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.53 | 46.0 | 3.42e-01 | 100.0% | 36.5% |
| 3257790 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.52 | 41.0 | 3.67e-01 | 88.0% | 79.2% |
| 4654721 | 3156.3.1.0 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family | 0.52 | 40.0 | 3.75e-01 | 86.7% | 90.9% |
| 137938 | 3156.3.1.1 ↗ | beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family › SAG | 0.52 | 42.0 | 3.91e-01 | 90.4% | 79.6% |
| 4262558 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.51 | 38.0 | 3.02e-01 | 81.9% | 47.2% |