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ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00161
Bact-VirALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00161
Identity
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 104-328
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00147.24 best | Fibrinogen_C | 27.1 | 5.00e-06 | 26.2% | 16.3% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.75 | 44.0 | 5.43e-01 | 100.0% | 89.1% |
| 6qnvA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.74 | 44.0 | 5.37e-01 | 100.0% | 89.9% |
| 1m1jE01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.71 | 45.0 | 5.38e-01 | 100.0% | 91.1% |
| 3ghgB02 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.65 | 61.0 | 5.83e-01 | 100.0% | 93.1% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.57 | 21.0 | 3.17e-01 | 84.4% | 78.0% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.54 | 18.0 | 3.16e-01 | 80.4% | 95.5% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 22.0 | 3.24e-01 | 99.6% | 96.7% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3623256 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.71 | 61.0 | 6.25e-01 | 100.0% | 94.4% |
| 3999734 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.69 | 45.0 | 5.14e-01 | 100.0% | 85.3% |
| 3846780 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.69 | 59.0 | 5.92e-01 | 100.0% | 88.3% |
| 2337056 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.69 | 64.0 | 5.95e-01 | 100.0% | 96.8% |
| 1563854 | 269.1.1.0 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like | 0.68 | 64.0 | 5.94e-01 | 100.0% | 96.8% |
| 3857077 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.68 | 60.0 | 5.40e-01 | 100.0% | 68.5% |
| 3749653 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.68 | 59.0 | 6.05e-01 | 100.0% | 93.6% |
| None | — | 0.68 | 60.0 | 5.07e-01 | 100.0% | 58.8% | |
| 3859133 | 269.1.1.0 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like | 0.68 | 60.0 | 5.02e-01 | 100.0% | 57.8% |
| 3547457 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.67 | 59.0 | 5.97e-01 | 100.0% | 92.4% |
| 3883788 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.67 | 59.0 | 5.23e-01 | 100.0% | 65.6% |
| 3848687 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.67 | 59.0 | 5.08e-01 | 100.0% | 62.1% |
| 3928426 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.67 | 62.0 | 6.12e-01 | 100.0% | 94.0% |
| 3229295 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.67 | 62.0 | 6.20e-01 | 100.0% | 96.5% |
| 3863890 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.66 | 59.0 | 5.17e-01 | 100.0% | 64.1% |
| 3237933 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.66 | 62.0 | 5.96e-01 | 100.0% | 95.7% |
| 3408464 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.66 | 59.0 | 5.99e-01 | 100.0% | 95.1% |
| 3415498 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.66 | 58.0 | 5.56e-01 | 100.0% | 80.8% |
| 2083983 | 269.1.1.2 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha | 0.65 | 61.0 | 5.52e-01 | 100.0% | 77.2% |
| 1772515 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.65 | 62.0 | 5.89e-01 | 100.0% | 95.3% |
| 4502283 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.65 | 58.0 | 5.97e-01 | 100.0% | 97.2% |
| 3552399 | 269.1.1.2 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C,Fib_alpha | 0.65 | 61.0 | 5.02e-01 | 100.0% | 61.8% |
| 1772519 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.65 | 61.0 | 5.89e-01 | 100.0% | 93.2% |
| 3629862 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.65 | 62.0 | 6.06e-01 | 100.0% | 97.1% |
| 3507385 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.65 | 56.0 | 5.85e-01 | 96.9% | 98.6% |
| 3409603 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.65 | 56.0 | 5.32e-01 | 100.0% | 77.6% |
| 3762420 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.64 | 59.0 | 5.01e-01 | 100.0% | 62.0% |
| 3526517 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.64 | 60.0 | 5.32e-01 | 100.0% | 73.0% |
| 3911174 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.63 | 59.0 | 5.24e-01 | 100.0% | 72.2% |
| 3221297 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.63 | 59.0 | 5.74e-01 | 100.0% | 94.4% |
| 3925894 | 269.1.1.1 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C | 0.63 | 59.0 | 5.48e-01 | 100.0% | 87.9% |
| 4624287 | 269.1.1.3 ↗ | a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI | 0.51 | 38.0 | 4.15e-01 | 100.0% | 93.5% |
| None | — | 0.50 | 30.0 | 3.20e-01 | 99.6% | 65.8% |
D2
medium
residues 22-87
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 40.0 | 3.96e-01 | 86.4% | 78.6% |
| 1k92A03 | 1.10.287.400 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 34.0 | 3.45e-01 | 84.8% | 71.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3373108 | 7025.1.1.0 ↗ | alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer | 0.91 | 64.0 | 5.96e-01 | 72.7% | 61.5% |
| 3257658 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 45.0 | 3.92e-01 | 77.3% | 57.0% |
| 3397519 | 109.4.1.386 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rapsyn_N | 0.60 | 51.0 | 3.06e-01 | 92.4% | 14.5% |
| 3266678 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.60 | 37.0 | 3.75e-01 | 97.0% | 63.1% |
| 3924230 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.59 | 52.0 | 3.23e-01 | 100.0% | 33.2% |
| 3705474 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 53.0 | 3.47e-01 | 98.5% | 29.2% |
| 4081026 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.57 | 51.0 | 4.54e-01 | 97.0% | 86.7% |
| 4891290 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.57 | 47.0 | 3.56e-01 | 90.9% | 79.7% |
| 3519618 | 109.21.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 | 0.54 | 44.0 | 2.66e-01 | 87.9% | 76.5% |
| 3320684 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 44.0 | 3.26e-01 | 89.4% | 60.0% |
| 2144238 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.51 | 40.0 | 3.74e-01 | 89.4% | 94.3% |