←Back to structures

ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00208

Bact-Vir

ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00208

Identity

Kingdom:
phage

Quality

92.6 mean pLDDT

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-174
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vz0A01 3.90.1530.30 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › 0.71 29.0 4.64e-01 80.1% 100.0%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 23.0 3.21e-01 80.7% 82.3%
1m94A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 22.0 3.19e-01 80.7% 87.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2061501 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.69 38.0 5.01e-01 77.1% 92.9%
4930273 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.53 37.0 3.75e-01 71.7% 78.8%
5083737 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.52 37.0 3.87e-01 71.7% 82.7%
4932240 876.1.1.0 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.51 36.0 3.38e-01 72.3% 71.5%
D2 medium residues 175-321
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k7dA01 1.20.120.1510 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 40.0 4.42e-01 74.1% 100.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3175685 7060.1.1.0 ↗ alpha arrays › ELMO domain › ELMO domain › ELMO domain 0.54 44.0 4.16e-01 86.4% 90.3%
5012980 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.51 41.0 3.52e-01 87.1% 88.0%
D3 medium residues 322-409
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.68 39.0 4.72e-01 73.9% 87.9%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.62 48.0 4.49e-01 86.4% 81.4%
1iq0A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 44.0 2.92e-01 77.3% 35.5%
3hzjA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.57 44.0 3.73e-01 83.0% 88.6%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 46.0 4.43e-01 92.0% 76.7%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 46.0 3.74e-01 95.5% 67.7%
1jvmB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 47.0 4.51e-01 98.9% 89.0%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 35.0 3.09e-01 70.5% 72.1%
3iylB02 1.10.2050.10 Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 0.52 42.0 3.70e-01 89.8% 64.9%
3enpA00 3.30.2380.10 Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB 0.51 41.0 3.39e-01 89.8% 62.0%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 31.0 3.28e-01 81.8% 68.0%
1jswA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 39.0 3.44e-01 84.1% 74.5%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3467508 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 49.0 3.01e-01 87.5% 16.1%
3226591 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 54.0 4.60e-01 100.0% 60.7%
4311571 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.61 45.0 4.27e-01 80.7% 74.5%
3232628 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.60 49.0 4.55e-01 90.9% 87.0%
3449294 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.27e-01 93.2% 77.0%
3848502 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.58 48.0 3.55e-01 94.3% 71.6%
3951203 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.57 41.0 3.34e-01 76.1% 53.7%
3588945 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.56 43.0 4.02e-01 85.2% 77.4%
3814488 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 43.0 4.06e-01 88.6% 81.8%
4995476 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.54 43.0 4.09e-01 87.5% 78.6%