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ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00315
Bact-VirALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00315
Identity
- Kingdom:
- phage
Quality
57.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 148-266
Domain cluster:
rep: NC_006883.2__YP_214260.1__PSSM2_028__00024__D138-240
D2
high
residues 435-524
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l1jA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 41.0 | 3.80e-01 | 91.1% | 55.1% |
| 2z9iC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 44.0 | 4.40e-01 | 90.0% | 79.3% |
| 2ofqA01 | 2.60.40.2500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 3.98e-01 | 96.7% | 73.0% |
| 1wb1A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 47.0 | 4.74e-01 | 100.0% | 92.4% |
| 5y2dA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 38.0 | 3.53e-01 | 91.1% | 53.3% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 48.0 | 4.70e-01 | 97.8% | 98.0% |
| 4psrA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 43.0 | 3.99e-01 | 100.0% | 64.8% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 47.0 | 4.76e-01 | 96.7% | 98.9% |
| 4c3iA04 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.55 | 40.0 | 3.41e-01 | 80.0% | 97.5% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 44.0 | 4.14e-01 | 90.0% | 73.6% |
| 2osxA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 37.0 | 3.61e-01 | 97.8% | 66.7% |
| 1z85A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.53 | 37.0 | 4.05e-01 | 93.3% | 100.0% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.81e-01 | 77.8% | 78.0% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 30.0 | 3.54e-01 | 74.4% | 87.7% |
| 4ri0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 44.0 | 3.48e-01 | 97.8% | 47.0% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.51 | 40.0 | 3.98e-01 | 85.6% | 93.5% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 36.0 | 3.57e-01 | 100.0% | 69.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4521518 | 1.1.7.121 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 | 0.63 | 48.0 | 4.49e-01 | 100.0% | 65.2% |
| 3230128 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.60 | 46.0 | 3.53e-01 | 100.0% | 34.5% |
| 4151877 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.59 | 52.0 | 5.00e-01 | 100.0% | 93.3% |
| 4347919 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.58 | 45.0 | 4.55e-01 | 100.0% | 85.6% |
| 4973665 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 40.0 | 4.11e-01 | 77.8% | 77.6% |
| 1005556 | 10.2.1.65 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › VP17_central_barrel | 0.55 | 47.0 | 4.75e-01 | 96.7% | 97.7% |
| 4953657 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 48.0 | 4.74e-01 | 100.0% | 97.9% |
| 3302541 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.54 | 46.0 | 4.30e-01 | 98.9% | 87.8% |
| 4360808 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.53 | 42.0 | 4.06e-01 | 100.0% | 76.7% |
| 3802051 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 4.41e-01 | 100.0% | 90.5% |
| 3813848 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.53 | 45.0 | 4.32e-01 | 97.8% | 91.4% |
| 4279262 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.53 | 40.0 | 2.98e-01 | 82.2% | 83.1% |
| 4952108 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.52 | 41.0 | 3.62e-01 | 100.0% | 54.7% |
| 3421728 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 4.02e-01 | 92.2% | 82.1% |
| 3608316 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.50 | 36.0 | 2.75e-01 | 76.7% | 56.4% |
D3
high
residues 617-682
D4
high
residues 809-864
Domain cluster:
rep: AB797215.1__BAN78445.1__X__00095__D1020-1072
D5
medium
residues 319-413
D6
medium
residues 696-784