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ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00391
Bact-VirALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00391
Identity
- Kingdom:
- phage
Quality
64.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-47
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00006__D16-54
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18454.8 best | Mtd_N | 36.2 | 6.40e-09 | 89.7% | 83.8% |
D2
high
residues 145-209
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k5fA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.71 | 55.0 | 5.09e-01 | 83.1% | 92.8% |
| 2c9aA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 43.0 | 3.33e-01 | 84.6% | 68.5% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 42.0 | 3.70e-01 | 86.2% | 63.9% |
| 4iknA01 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.54 | 40.0 | 3.29e-01 | 86.2% | 79.7% |
| 4i68A00 | 3.30.70.1800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.44e-01 | 75.4% | 78.9% |
| 6m9sD01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 43.0 | 3.83e-01 | 98.5% | 74.3% |
| 1pkhB00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.50 | 39.0 | 2.93e-01 | 86.2% | 80.6% |
| 1gw5M02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.50 | 37.0 | 3.02e-01 | 84.6% | 75.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949379 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.58 | 40.0 | 3.51e-01 | 72.3% | 76.0% |
| 3691139 | 11.1.5.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub | 0.54 | 41.0 | 3.10e-01 | 87.7% | 76.8% |
| 4995691 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.54 | 43.0 | 3.89e-01 | 95.4% | 80.0% |
| 3371547 | 11.1.1.910 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPD1_C | 0.53 | 39.0 | 3.58e-01 | 84.6% | 91.8% |
D3
high
residues 416-487
D4
high
residues 493-635
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c12A02 | 2.60.40.4070 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 39.0 | 4.84e-01 | 83.9% | 87.4% |
| 8ezmH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 46.0 | 5.09e-01 | 86.0% | 83.9% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 33.0 | 4.32e-01 | 83.9% | 85.9% |
| 4kh9A03 | 2.60.120.1370 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 38.0 | 4.19e-01 | 88.1% | 75.2% |
| 2yocA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 30.0 | 3.43e-01 | 81.8% | 60.2% |
| 6tqdC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 34.0 | 4.03e-01 | 88.1% | 85.4% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 34.0 | 3.90e-01 | 88.1% | 80.6% |
| 3rghA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 34.0 | 3.93e-01 | 88.8% | 83.3% |
| 1lnsA04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 48.0 | 4.37e-01 | 90.2% | 89.8% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 3.99e-01 | 86.0% | 85.6% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 47.0 | 4.48e-01 | 90.2% | 95.8% |
| 1pmhX00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 4.28e-01 | 89.5% | 97.3% |
| 1p7hL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 35.0 | 3.94e-01 | 89.5% | 85.0% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 45.0 | 4.45e-01 | 90.2% | 96.8% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 30.0 | 3.75e-01 | 88.1% | 96.2% |
| 4jqrA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.53 | 44.0 | 3.79e-01 | 88.1% | 100.0% |
| 1stmA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.53 | 44.0 | 4.49e-01 | 89.5% | 92.9% |
| 4ag4A02 | 2.60.120.1190 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.95e-01 | 85.3% | 75.7% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 35.0 | 3.65e-01 | 92.3% | 72.5% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 44.0 | 3.69e-01 | 89.5% | 73.6% |
| 8hhvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 38.0 | 4.04e-01 | 85.3% | 86.9% |
| 4nwvA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 4.02e-01 | 88.8% | 85.3% |
| 3zssA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.66e-01 | 88.8% | 79.6% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.52 | 43.0 | 4.01e-01 | 88.8% | 98.3% |
| 1upsB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.72e-01 | 95.8% | 97.7% |
| 4agrB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 4.29e-01 | 88.1% | 88.2% |
| 2zxqA05 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 3.82e-01 | 88.1% | 91.9% |
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.70e-01 | 88.8% | 80.7% |
| 2e1qC07 | 3.90.1170.50 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead | 0.51 | 32.0 | 3.82e-01 | 79.0% | 94.7% |
| 2cnzA00 | 2.60.40.1570 | Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin | 0.51 | 40.0 | 4.31e-01 | 88.1% | 98.4% |
| 3gnnA01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.51 | 34.0 | 3.48e-01 | 100.0% | 69.6% |
| 2cwsA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.72e-01 | 93.7% | 65.6% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.50 | 42.0 | 3.53e-01 | 88.8% | 100.0% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 42.0 | 4.03e-01 | 88.1% | 96.9% |
| 4gqzA00 | 2.60.40.3700 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 33.0 | 3.20e-01 | 80.4% | 60.3% |
| 1fx5B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 3.48e-01 | 88.1% | 97.9% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027527 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.62 | 34.0 | 4.21e-01 | 88.8% | 88.2% |
| 5026423 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 42.0 | 4.75e-01 | 88.1% | 95.2% |
| 3396112 | 10.32.1.235 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MBF2 | 0.60 | 40.0 | 4.66e-01 | 96.5% | 96.0% |
| 3286203 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 35.0 | 3.95e-01 | 87.4% | 77.1% |
| 5062062 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.59 | 34.0 | 3.95e-01 | 86.0% | 79.0% |
| 3531612 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 29.0 | 3.73e-01 | 85.3% | 82.5% |
| None | — | 0.58 | 37.0 | 4.24e-01 | 88.1% | 86.7% | |
| 4382620 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.58 | 38.0 | 4.52e-01 | 83.2% | 98.9% |
| 1714453 | 11.21.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like | 0.58 | 37.0 | 4.36e-01 | 88.1% | 96.8% |
| 5014000 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 41.0 | 4.26e-01 | 87.4% | 77.8% |
| 3699612 | 10.32.1.202 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FAP42_B2 | 0.58 | 45.0 | 4.70e-01 | 89.5% | 90.8% |
| 5031166 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 47.0 | 4.44e-01 | 89.5% | 97.7% |
| 5010649 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 35.0 | 4.18e-01 | 85.3% | 97.7% |
| 2879296 | 10.32.1.78 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PirA-like | 0.56 | 39.0 | 4.47e-01 | 82.5% | 100.0% |
| 5069182 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 39.0 | 4.19e-01 | 86.0% | 83.2% |
| 3605972 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 40.0 | 4.43e-01 | 87.4% | 97.3% |
| 3306477 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.55 | 38.0 | 4.08e-01 | 83.2% | 80.8% |
| 3703423 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 43.0 | 4.49e-01 | 83.9% | 90.4% |
| 3235629 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.54 | 45.0 | 4.21e-01 | 88.1% | 96.6% |
| 4979950 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 45.0 | 3.72e-01 | 89.5% | 55.7% |
| 4358788 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.54 | 49.0 | 3.21e-01 | 100.0% | 46.0% |
| 5040751 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 39.0 | 4.38e-01 | 87.4% | 99.1% |
| 4071322 | 10.32.1.18 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C | 0.54 | 45.0 | 4.32e-01 | 88.8% | 95.0% |
| 4030661 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 45.0 | 4.17e-01 | 88.1% | 100.0% |
| 3572391 | 712.1.1.1 ↗ | beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › TLV_coat | 0.53 | 42.0 | 3.88e-01 | 84.6% | 87.9% |
| 224604 | 10.32.1.45 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4465 | 0.53 | 44.0 | 3.79e-01 | 88.1% | 100.0% |
| 1236 | 10.2.1.42 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Potex_coat | 0.53 | 44.0 | 4.49e-01 | 89.5% | 92.9% |
| 3391776 | 10.32.1.69 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › LAMININ_IV_B | 0.52 | 43.0 | 3.74e-01 | 87.4% | 74.9% |
| 5039141 | 10.1.2.184 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C | 0.52 | 43.0 | 4.26e-01 | 89.5% | 98.0% |
| 2441244 | 10.2.1.7 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat | 0.52 | 42.0 | 3.72e-01 | 88.8% | 78.2% |
| 3573635 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 42.0 | 4.07e-01 | 88.1% | 79.4% |
| 4032561 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 44.0 | 3.89e-01 | 97.9% | 80.4% |
| 5039777 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 41.0 | 3.07e-01 | 87.4% | 50.3% |
| 3228176 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 41.0 | 4.04e-01 | 88.1% | 93.1% |
| 4615735 | 10.32.1.274 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27453 | 0.51 | 36.0 | 4.07e-01 | 88.8% | 100.0% |
| 3422860 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 42.0 | 3.97e-01 | 89.5% | 100.0% |
| 4029373 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 42.0 | 3.99e-01 | 90.2% | 90.8% |
D5
medium
residues 76-131