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ALT_09252017_20_scaffold_206_prodigal-single.1__X__X__00005

Bact-Vir

ALT_09252017_20_scaffold_206_prodigal-single.1__X__X__00005

Identity

Kingdom:
phage

Quality

92.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 60.0 4.73e-01 98.0% 62.8%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 59.0 5.20e-01 100.0% 75.6%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 59.0 5.21e-01 100.0% 80.0%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 58.0 5.12e-01 98.0% 90.8%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.67 58.0 5.34e-01 100.0% 74.6%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.66 52.0 4.88e-01 100.0% 70.1%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.66 52.0 4.84e-01 100.0% 68.1%
6i7dB01 6.20.240.20 Special › Other non-globular › Alpha-Beta Plaits › 0.66 52.0 5.00e-01 90.0% 89.8%
5hmpB02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 56.0 5.18e-01 98.0% 92.2%
2x51A06 3.30.70.1590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 55.0 5.07e-01 100.0% 97.0%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 54.0 4.41e-01 100.0% 53.8%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 53.0 4.56e-01 98.0% 82.6%
4byfA01 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 54.0 4.55e-01 100.0% 74.4%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 53.0 4.91e-01 100.0% 84.1%
2cpjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 55.0 4.44e-01 100.0% 56.6%
2mysA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 53.0 4.04e-01 98.0% 48.0%
1g8xA06 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 3.29e-01 98.0% 20.4%
2cqpA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 53.0 4.37e-01 100.0% 64.3%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.62 50.0 4.28e-01 98.0% 53.9%
1w9lA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 43.0 4.69e-01 74.0% 100.0%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 52.0 4.60e-01 100.0% 71.4%
2cqhA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 50.0 4.23e-01 100.0% 61.3%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.60 49.0 4.33e-01 100.0% 79.5%
3cu7A12 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.60 51.0 3.79e-01 100.0% 39.1%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.60 49.0 4.88e-01 100.0% 94.5%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 4.11e-01 100.0% 61.3%
2yxlA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.59 49.0 4.77e-01 100.0% 93.1%
3i4pA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.59 49.0 4.27e-01 100.0% 73.8%
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.59 45.0 4.36e-01 100.0% 77.6%
2rioA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 40.0 3.57e-01 78.0% 57.3%
3oq3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.98e-01 100.0% 52.0%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.97e-01 96.0% 67.1%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.85e-01 90.0% 68.8%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.82e-01 90.0% 66.7%
1r89A04 3.30.70.1550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Archaeal tRNA CCA-adding enzyme catalytic domain 0.56 39.0 4.02e-01 82.0% 86.4%
2cw8A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 44.0 3.23e-01 100.0% 44.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.06e-01 82.0% 41.9%
3m4xA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.55 44.0 3.77e-01 100.0% 53.4%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 3.96e-01 100.0% 66.2%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.53e-01 90.0% 57.3%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.58e-01 96.0% 59.4%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.53 43.0 2.79e-01 92.0% 98.3%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.68e-01 96.0% 69.1%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.67e-01 96.0% 66.7%
6igmG01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 40.0 3.54e-01 88.0% 89.7%
3dkwG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.58e-01 96.0% 67.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248261 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.68 57.0 5.24e-01 100.0% 78.6%
4943544 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 57.0 5.19e-01 100.0% 80.0%
3181470 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.68 57.0 3.23e-01 96.0% 9.8%
4965698 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.67 58.0 5.02e-01 100.0% 70.0%
4578097 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.66 54.0 3.07e-01 98.0% 10.3%
5293 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.66 52.0 4.86e-01 100.0% 69.1%
4937548 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.66 54.0 5.36e-01 100.0% 90.9%
5082595 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.66 55.0 5.16e-01 100.0% 89.2%
4990073 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 56.0 5.09e-01 100.0% 78.6%
4934529 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.65 54.0 4.98e-01 100.0% 74.3%
None 0.65 55.0 3.00e-01 98.0% 8.0%
3981377 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.65 53.0 5.02e-01 100.0% 90.8%
5043379 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.65 54.0 5.06e-01 100.0% 83.1%
4362064 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.65 55.0 5.01e-01 100.0% 75.7%
None 0.64 52.0 2.89e-01 98.0% 8.1%
4538202 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.64 53.0 2.95e-01 98.0% 10.2%
None 0.64 53.0 2.88e-01 98.0% 6.9%
4033416 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.64 54.0 4.92e-01 100.0% 78.6%
3259870 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.64 54.0 4.91e-01 98.0% 74.3%
3254951 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 55.0 4.45e-01 100.0% 57.1%
3778657 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 52.0 2.89e-01 96.0% 7.9%
4996337 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 51.0 4.96e-01 100.0% 95.0%
4928456 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.63 53.0 4.96e-01 100.0% 89.2%
3271085 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.63 51.0 2.87e-01 98.0% 9.7%
4946311 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.62 50.0 4.58e-01 100.0% 70.7%
3267478 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 53.0 4.60e-01 100.0% 68.8%
3591539 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.62 50.0 2.83e-01 100.0% 9.7%
4658950 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 51.0 4.61e-01 100.0% 68.0%
3787854 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.62 44.0 3.63e-01 78.0% 49.5%
5022487 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 50.0 4.83e-01 100.0% 93.2%
4402383 3860.1.1.260 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head, IQ, Myosin_tail_1 0.61 50.0 3.41e-01 96.0% 32.2%
3972094 304.120.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st 0.61 48.0 4.67e-01 100.0% 80.0%
4031179 304.7.1.14 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › PPI 0.61 50.0 4.59e-01 100.0% 74.3%
3968877 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 49.0 4.48e-01 100.0% 76.0%
5035477 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 48.0 4.23e-01 96.0% 61.2%
5047912 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.60 49.0 4.61e-01 100.0% 76.9%
4174001 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.60 49.0 4.64e-01 100.0% 76.9%
4576277 304.22.1.1 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.60 49.0 4.53e-01 100.0% 70.0%
4956226 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.59 48.0 4.35e-01 100.0% 86.7%
5033390 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.59 48.0 3.67e-01 100.0% 37.7%
3586924 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.59 47.0 4.23e-01 100.0% 70.0%
3744728 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 47.0 4.75e-01 96.0% 95.8%
4940097 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 45.0 4.21e-01 96.0% 72.9%
3724312 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.66e-01 82.0% 76.5%
3785450 304.9.1.103 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26763 0.57 44.0 3.89e-01 100.0% 64.4%
4954582 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.55 44.0 3.44e-01 100.0% 42.2%
4956865 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.55 43.0 3.11e-01 100.0% 60.1%
4001363 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 38.0 2.91e-01 80.0% 28.9%
4971513 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.54 43.0 4.07e-01 100.0% 81.4%
3165017 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.54 41.0 3.57e-01 92.0% 61.1%
4323104 304.22.1.0 a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.54 42.0 4.14e-01 100.0% 86.7%
5011299 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.43e-01 100.0% 84.3%
5029514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.35e-01 80.0% 60.0%
5052446 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.00e-01 80.0% 40.9%
4365716 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.53 40.0 2.36e-01 88.0% 17.3%
None 0.52 42.0 2.65e-01 100.0% 25.8%
5018202 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.09e-01 84.0% 72.2%
3740339 2498.1.1.6 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.52 41.0 2.34e-01 96.0% 14.4%
4947538 3625.1.1.0 alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain 0.51 41.0 3.65e-01 98.0% 73.8%
4028643 101.1.11.187 alpha arrays › HTH › HTH › Ribbon-helix-helix › NOL10_2nd 0.51 37.0 3.47e-01 100.0% 60.0%
2753608 825.1.1.2 beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.51 35.0 2.26e-01 78.0% 17.3%
4941350 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 35.0 2.36e-01 72.0% 69.8%