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ALT_09252017_20_scaffold_206_prodigal-single.1__X__X__00069

Bact-Vir

ALT_09252017_20_scaffold_206_prodigal-single.1__X__X__00069

Identity

Kingdom:
phage

Quality

87.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.81 67.0 5.42e-01 89.0% 82.7%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 66.0 4.28e-01 93.2% 31.3%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.75 67.0 6.19e-01 100.0% 83.2%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 59.0 5.95e-01 87.7% 90.4%
1xwmA00 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.73 58.0 4.18e-01 87.7% 41.5%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.73 59.0 5.34e-01 89.0% 87.8%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.71 49.0 4.85e-01 84.9% 67.1%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.71 57.0 5.45e-01 87.7% 80.0%
2o5iN07 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.70 56.0 4.74e-01 84.9% 83.6%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 56.0 4.32e-01 89.0% 74.6%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.70 56.0 5.00e-01 89.0% 79.2%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.70 60.0 5.27e-01 100.0% 86.8%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.70 55.0 5.29e-01 87.7% 78.8%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 48.0 4.17e-01 86.3% 47.0%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.68 53.0 4.40e-01 82.2% 50.8%
2h7oA01 1.20.120.1330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain 0.68 54.0 4.60e-01 87.7% 52.0%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.68 58.0 4.71e-01 100.0% 70.1%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 53.0 5.09e-01 87.7% 88.2%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 50.0 4.85e-01 78.1% 76.5%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.67 48.0 5.13e-01 100.0% 87.3%
3j27A05 1.20.1280.260 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 43.0 3.87e-01 72.6% 47.0%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.67 58.0 4.38e-01 100.0% 64.8%
3oxfA05 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 47.0 4.74e-01 86.3% 73.3%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 50.0 4.60e-01 86.3% 97.1%
1zzpA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.64 50.0 4.44e-01 86.3% 64.2%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 54.0 5.18e-01 100.0% 82.8%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.64 53.0 4.30e-01 98.6% 98.7%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 48.0 3.29e-01 79.5% 76.3%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.63 50.0 4.05e-01 90.4% 100.0%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 51.0 4.69e-01 100.0% 69.3%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.62 49.0 5.27e-01 100.0% 98.4%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.62 51.0 5.02e-01 100.0% 89.7%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.61 47.0 4.73e-01 100.0% 78.7%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 42.0 3.85e-01 72.6% 79.8%
4f91B04 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.60 47.0 3.91e-01 89.0% 81.0%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.60 52.0 4.07e-01 97.3% 66.5%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 46.0 3.91e-01 86.3% 67.2%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.59 43.0 4.71e-01 97.3% 100.0%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.57 40.0 3.82e-01 74.0% 62.4%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.57 49.0 4.20e-01 100.0% 59.7%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 49.0 3.91e-01 100.0% 55.3%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 39.0 3.71e-01 74.0% 62.5%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 3.86e-01 100.0% 94.0%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.55 44.0 3.03e-01 89.0% 57.0%
1ng6A01 1.10.1510.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain 0.55 46.0 4.33e-01 100.0% 76.9%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.54 44.0 4.29e-01 100.0% 90.7%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.51 40.0 3.99e-01 100.0% 85.2%
3f1xA01 1.10.3130.10 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 0.50 44.0 3.55e-01 100.0% 97.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979768 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.89 82.0 7.23e-01 97.3% 75.0%
4958049 4204.1.1.5 alpha bundles › AF0941-like › AF0941-like › AF0941-like › DUF2150 0.83 71.0 6.06e-01 90.4% 68.2%
4032384 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.80 66.0 6.39e-01 87.7% 85.0%
4080313 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.80 65.0 5.22e-01 89.0% 84.3%
4018207 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.79 65.0 4.96e-01 89.0% 61.8%
3560925 604.1.1.20 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.78 64.0 5.57e-01 89.0% 84.5%
3704526 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.77 62.0 4.73e-01 87.7% 75.2%
3940580 604.6.1.14 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C 0.74 60.0 5.15e-01 89.0% 77.4%
4159522 3724.1.1.0 alpha arrays › Phosphoinositide phosphatase C-terminal helical domain › Phosphoinositide phosphatase C-terminal helical domain › Phosphoinositide phosphatase C-terminal helical domain 0.73 66.0 5.79e-01 98.6% 85.7%
4953311 604.20.1.0 alpha bundles › Spectrin repeat-like › C-terminal domain in hypothetical protein BACOVA_03992 › C-terminal domain in hypothetical protein BACOVA_03992 0.73 67.0 5.93e-01 98.6% 91.0%
5045531 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.73 60.0 5.69e-01 89.0% 81.2%
3228341 604.1.1.55 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C 0.73 58.0 5.02e-01 87.7% 68.7%
3965783 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.73 63.0 4.48e-01 95.9% 84.7%
4988743 7011.1.1.5 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › O_anti_polymase 0.72 66.0 4.23e-01 100.0% 51.7%
3405299 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 61.0 4.30e-01 93.2% 52.4%
4028531 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 55.0 3.54e-01 89.0% 18.4%
3382589 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.70 57.0 4.63e-01 89.0% 47.4%
5022737 1030.1.1.1 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.69 60.0 4.65e-01 100.0% 55.6%
4150217 633.2.1.1 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.69 56.0 5.25e-01 100.0% 73.3%
5002794 514.1.1.0 alpha bundles › YutG-like › YutG-like › YutG-like 0.69 61.0 5.05e-01 95.9% 84.0%
3704762 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 54.0 4.57e-01 87.7% 62.4%
3839108 310.2.1.65 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › MotA_ExbB 0.68 54.0 4.58e-01 87.7% 88.8%
3600076 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 58.0 4.51e-01 100.0% 83.5%
3594150 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 58.0 4.50e-01 100.0% 82.9%
3743752 192.15.1.1 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 0.67 54.0 5.13e-01 86.3% 88.2%
3168872 192.15.1.1 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 0.67 54.0 4.80e-01 87.7% 80.0%
3593620 633.23.1.23 alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.67 57.0 4.42e-01 100.0% 87.2%
3266283 509.1.1.13 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.66 48.0 4.94e-01 100.0% 81.4%
4054488 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 51.0 4.32e-01 87.7% 62.4%
2503462 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.63 49.0 4.57e-01 84.9% 69.1%
3669852 1075.5.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.63 54.0 3.84e-01 98.6% 56.6%
4168957 1197.1.1.1 alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.62 49.0 3.70e-01 89.0% 88.7%
2394140 1203.1.2.1 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.62 52.0 4.13e-01 100.0% 72.8%
4370184 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.61 53.0 4.00e-01 98.6% 79.3%
4401833 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.60 48.0 4.42e-01 90.4% 78.0%
4080847 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.60 48.0 4.86e-01 100.0% 94.3%
3385184 632.13.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like 0.60 42.0 4.44e-01 89.0% 83.1%
3590053 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.60 46.0 4.40e-01 84.9% 76.5%
51101 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.59 51.0 4.18e-01 100.0% 98.6%
4648665 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.57 42.0 4.05e-01 79.5% 72.9%
3997639 7563.1.1.0 a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related 0.57 47.0 3.17e-01 95.9% 68.6%
5057187 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.57 49.0 3.10e-01 97.3% 45.1%
4971151 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.55 44.0 3.38e-01 100.0% 35.6%
4974229 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.54 45.0 3.54e-01 97.3% 97.1%
5026673 187.1.1.1 alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.53 46.0 4.39e-01 100.0% 90.0%
4271344 101.1.1.305 alpha arrays › HTH › HTH › Three-helical HTH › ALS2CR8 0.51 38.0 3.93e-01 100.0% 88.6%