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ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00032
Bact-VirALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00032
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-61
D2
medium
residues 62-82_457-534
D3
medium
residues 83-132
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gouA01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.62 | 43.0 | 3.13e-01 | 74.0% | 25.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4542639 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.64 | 47.0 | 3.18e-01 | 76.0% | 41.0% |
| 3798315 | 196.1.1.0 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS | 0.59 | 41.0 | 2.98e-01 | 80.0% | 24.4% |
| 3794491 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.58 | 41.0 | 2.98e-01 | 80.0% | 24.4% |
D4
medium
residues 133-239
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gc1A01 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.68 | 30.0 | 3.06e-01 | 86.9% | 41.3% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 36.0 | 4.11e-01 | 87.9% | 75.3% |
| 3au0A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 41.0 | 3.65e-01 | 95.3% | 50.3% |
| 3wdoA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 31.0 | 3.90e-01 | 91.6% | 96.7% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 31.0 | 3.70e-01 | 91.6% | 86.8% |
| 1kviA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 32.0 | 3.62e-01 | 92.5% | 79.7% |
| 7kbrC01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 37.0 | 3.45e-01 | 73.8% | 57.5% |
| 1whrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.52 | 30.0 | 2.91e-01 | 97.2% | 47.6% |
| 4u9rA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.99e-01 | 94.4% | 93.9% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.52 | 38.0 | 3.86e-01 | 92.5% | 75.9% |
| 3onqA02 | 3.30.70.2730 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 30.0 | 3.35e-01 | 88.8% | 74.1% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 21.0 | 2.83e-01 | 97.2% | 70.2% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 32.0 | 2.83e-01 | 86.9% | 40.5% |
| 2kkhA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.50e-01 | 92.5% | 84.0% |
| 1yjrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 31.0 | 3.53e-01 | 93.5% | 85.3% |
| 3va7A05 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 34.0 | 3.55e-01 | 96.3% | 75.0% |
| 1wycA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 38.0 | 3.02e-01 | 81.3% | 67.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3323014 | 304.4.1.68 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › RRM_DEAH11 | 0.56 | 36.0 | 4.02e-01 | 97.2% | 86.3% |
| 3329737 | 304.9.1.157 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_DEAH11 | 0.54 | 36.0 | 3.86e-01 | 97.2% | 80.0% |
| 3704170 | 331.2.1.10 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PTHB1_pf | 0.54 | 35.0 | 3.72e-01 | 88.8% | 74.7% |
| 3675176 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.53 | 40.0 | 3.64e-01 | 80.4% | 77.3% |
| 3813848 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.53 | 43.0 | 4.33e-01 | 94.4% | 86.7% |
| 3887378 | 4178.1.1.1 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 | 0.53 | 37.0 | 3.42e-01 | 73.8% | 55.8% |
| 149919 | 383.1.1.0 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related | 0.53 | 20.0 | 2.95e-01 | 80.4% | 100.0% |
| 3933193 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.53 | 31.0 | 3.70e-01 | 91.6% | 88.6% |
| 3809656 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.52 | 35.0 | 3.80e-01 | 94.4% | 81.1% |
| 3557179 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.52 | 32.0 | 3.55e-01 | 93.5% | 80.0% |
| 3710853 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.52 | 31.0 | 3.51e-01 | 93.5% | 80.0% |
| 3674400 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.51 | 39.0 | 3.43e-01 | 80.4% | 75.6% |
| None | — | 0.51 | 39.0 | 3.44e-01 | 80.4% | 77.4% | |
| 4880797 | 60.1.1.2 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Med25 | 0.50 | 38.0 | 3.54e-01 | 80.4% | 66.9% |
| 5079486 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 36.0 | 3.32e-01 | 80.4% | 57.1% |
D5
medium
residues 240-278_313-407
Domain cluster:
rep: SR-VP_4-6_scaffold_141_4086954_prodigal-single.1__X__X__00061__D195-341
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.68 | 37.0 | 4.89e-01 | 100.0% | 97.3% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.63 | 32.0 | 3.79e-01 | 82.8% | 70.7% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.62 | 37.0 | 4.56e-01 | 93.3% | 92.0% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.60 | 23.0 | 3.59e-01 | 82.8% | 91.8% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.59 | 41.0 | 4.38e-01 | 100.0% | 82.5% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 38.0 | 4.58e-01 | 94.0% | 100.0% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 26.0 | 3.48e-01 | 96.3% | 77.9% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.56 | 33.0 | 4.10e-01 | 79.1% | 96.3% |
| 3tmgB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 44.0 | 4.19e-01 | 84.3% | 94.9% |
| 1eqfA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 39.0 | 4.06e-01 | 94.8% | 78.4% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 36.0 | 4.14e-01 | 75.4% | 94.7% |
| 2v40A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.54 | 35.0 | 4.22e-01 | 98.5% | 100.0% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.54 | 40.0 | 4.10e-01 | 94.8% | 81.2% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 28.0 | 3.19e-01 | 83.6% | 63.2% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.54 | 25.0 | 2.68e-01 | 81.3% | 46.6% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 27.0 | 3.43e-01 | 81.3% | 85.1% |
| 3q2eA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.53 | 38.0 | 4.18e-01 | 95.5% | 92.5% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.51 | 42.0 | 4.05e-01 | 89.6% | 88.3% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 38.0 | 4.23e-01 | 93.3% | 100.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060163 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.75 | 37.0 | 5.20e-01 | 86.6% | 98.5% |
| 3629156 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.56 | 39.0 | 4.01e-01 | 95.5% | 76.0% |
| 4029218 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 38.0 | 2.79e-01 | 70.9% | 53.2% |
| 5035499 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.54 | 23.0 | 3.01e-01 | 79.1% | 68.0% |
| 3497645 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.53 | 27.0 | 3.39e-01 | 81.3% | 81.2% |
| 3931056 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.52 | 37.0 | 4.07e-01 | 93.3% | 92.4% |
| 5046799 | 10.13.1.10 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › Cation_ATPase_C | 0.51 | 40.0 | 2.72e-01 | 85.1% | 83.2% |
| 3581466 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.51 | 25.0 | 3.17e-01 | 78.4% | 77.5% |
D6
medium
residues 535-623