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ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00065
Bact-VirALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00065
Identity
- Kingdom:
- phage
Quality
96.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-71
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cmzA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.60 | 39.0 | 3.66e-01 | 70.0% | 50.5% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 42.0 | 3.90e-01 | 75.7% | 71.7% |
| 1vd4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 37.0 | 3.87e-01 | 72.9% | 71.0% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 4.10e-01 | 74.3% | 90.3% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 4.40e-01 | 95.7% | 100.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 40.0 | 4.08e-01 | 82.9% | 88.6% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 4.03e-01 | 81.4% | 83.3% |
| 1yuaA01 | 3.30.65.10 | Alpha Beta › 2-Layer Sandwich › Bacterial Topoisomerase I; domain 1 › Bacterial Topoisomerase I, domain 1 | 0.53 | 34.0 | 3.57e-01 | 94.3% | 71.9% |
| 6gfaA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.51 | 32.0 | 3.43e-01 | 87.1% | 76.8% |
| 3apuB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 40.0 | 3.16e-01 | 91.4% | 70.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992515 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.63 | 38.0 | 4.26e-01 | 70.0% | 84.0% |
| 3413710 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.61 | 29.0 | 3.32e-01 | 81.4% | 56.0% |
| 4322655 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 37.0 | 4.17e-01 | 70.0% | 91.1% |
| 4407102 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.60 | 36.0 | 4.19e-01 | 94.3% | 93.3% |
| 154312 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.60 | 42.0 | 4.22e-01 | 74.3% | 80.0% |
| 3765704 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 36.0 | 2.18e-01 | 70.0% | 7.5% |
| 4669770 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.59 | 37.0 | 2.36e-01 | 72.9% | 11.5% |
| 4310743 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.59 | 37.0 | 4.20e-01 | 72.9% | 97.8% |
| 8014 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.59 | 37.0 | 3.87e-01 | 72.9% | 71.0% |
| 4049910 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.58 | 34.0 | 3.98e-01 | 81.4% | 91.1% |
| 3260781 | 241.10.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 | 0.57 | 48.0 | 4.89e-01 | 94.3% | 100.0% |
| 3997793 | 11.1.1.504 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Dynactin_p62 | 0.56 | 38.0 | 2.79e-01 | 72.9% | 35.3% |
| 4938828 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 40.0 | 4.26e-01 | 75.7% | 90.0% |
| 3216497 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.55 | 29.0 | 3.29e-01 | 81.4% | 67.9% |
| 3475543 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.54 | 32.0 | 3.80e-01 | 100.0% | 91.1% |
| 4139409 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.53 | 30.0 | 3.54e-01 | 80.0% | 92.5% |
| 4091907 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.53 | 40.0 | 3.33e-01 | 84.3% | 83.0% |
| 4949981 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.52 | 43.0 | 3.56e-01 | 91.4% | 84.8% |
| 3511375 | 4.1.1.349 ↗ | beta barrels › SH3 › SH3 › SH3 › ROF | 0.50 | 38.0 | 3.63e-01 | 84.3% | 78.8% |
| 3927543 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.50 | 33.0 | 3.66e-01 | 88.6% | 94.0% |