←Back to structures
ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00128
Bact-VirALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00128
Identity
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 160-216
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e52B01 | 3.40.91.70 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Type II restriction endonuclease, HindIII | 0.66 | 51.0 | 3.44e-01 | 100.0% | 21.9% |
| 6f40A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.65 | 53.0 | 3.93e-01 | 91.2% | 96.0% |
| 2c2vV00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 43.0 | 4.09e-01 | 84.2% | 61.4% |
| 2kpqA01 | 6.10.250.730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 48.0 | 4.45e-01 | 87.7% | 74.3% |
| 2jroA01 | 3.30.1910.10 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain | 0.61 | 47.0 | 4.51e-01 | 84.2% | 89.2% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 51.0 | 3.86e-01 | 94.7% | 72.9% |
| 2eciA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 43.0 | 4.66e-01 | 86.0% | 97.8% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 50.0 | 3.90e-01 | 98.2% | 63.4% |
| 2ipcA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.57 | 40.0 | 2.67e-01 | 89.5% | 17.8% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.56 | 49.0 | 4.47e-01 | 98.2% | 90.8% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.56 | 42.0 | 3.26e-01 | 93.0% | 35.1% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.55 | 48.0 | 3.89e-01 | 100.0% | 65.5% |
| 2xuvB00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.55 | 39.0 | 3.63e-01 | 73.7% | 81.7% |
| 1r3bA01 | 1.20.140.30 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator | 0.53 | 45.0 | 3.27e-01 | 100.0% | 37.4% |
| 3caoA00 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.52 | 35.0 | 3.01e-01 | 71.9% | 56.9% |
| 1e5tA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 2.73e-01 | 100.0% | 38.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3331533 | 3559.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 | 0.66 | 48.0 | 3.61e-01 | 93.0% | 31.5% |
| 3270116 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.63 | 57.0 | 4.76e-01 | 100.0% | 88.4% |
| 3816365 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 53.0 | 4.42e-01 | 98.2% | 89.0% |
| 3700136 | 177.1.1.2 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › S1-P1_nuclease | 0.60 | 51.0 | 3.27e-01 | 94.7% | 69.0% |
| 3173112 | 1203.1.2.4 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › Vps55 | 0.59 | 53.0 | 3.99e-01 | 100.0% | 72.6% |
| 4979114 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.57 | 44.0 | 3.47e-01 | 93.0% | 38.4% |
| 3267995 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 50.0 | 3.55e-01 | 100.0% | 34.9% |
| 3251160 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.56 | 48.0 | 4.03e-01 | 96.5% | 72.0% |
| 3169604 | 2004.1.1.495 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st | 0.55 | 45.0 | 3.12e-01 | 98.2% | 66.5% |
| 3639694 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 48.0 | 2.98e-01 | 100.0% | 33.7% |
| 5048467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 46.0 | 3.44e-01 | 98.2% | 100.0% |
| 3600525 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.53 | 44.0 | 2.95e-01 | 100.0% | 58.3% |
| 4929015 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 45.0 | 4.15e-01 | 100.0% | 98.7% |
| 4176828 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 38.0 | 3.67e-01 | 93.0% | 71.4% |
D2
medium
residues 37-152
Domain cluster:
rep: KJ591605.1__AID17455.1__X__00001__D25-108
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00805.29 best | Pentapeptide | 46.6 | 2.60e-12 | 34.5% | 100.0% |
| PF00805.29 | Pentapeptide | 58.1 | 6.80e-16 | 34.5% | 100.0% |
| PF00805.29 | Pentapeptide | 46.3 | 3.30e-12 | 32.8% | 92.5% |
| PF00805.29 | Pentapeptide | 37.5 | 1.80e-09 | 27.6% | 75.0% |