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ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00155
Bact-VirALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00155
Identity
- Kingdom:
- phage
Quality
66.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-75
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.82 | 64.0 | 5.29e-01 | 100.0% | 48.9% |
| 2ia0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 59.0 | 5.82e-01 | 100.0% | 74.1% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 58.0 | 5.72e-01 | 100.0% | 72.7% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 56.0 | 5.78e-01 | 98.1% | 78.0% |
| 7s03A01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.79 | 60.0 | 6.08e-01 | 100.0% | 86.0% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 57.0 | 5.80e-01 | 100.0% | 80.0% |
| 4usaA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.77 | 62.0 | 4.77e-01 | 100.0% | 39.5% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 63.0 | 6.09e-01 | 100.0% | 82.8% |
| 4ragA02 | 1.10.10.430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily | 0.74 | 61.0 | 5.64e-01 | 100.0% | 72.1% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.72 | 64.0 | 5.50e-01 | 100.0% | 64.2% |
| 2p5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 52.0 | 5.26e-01 | 100.0% | 76.9% |
| 1t3qA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.72 | 58.0 | 5.03e-01 | 100.0% | 58.0% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.70 | 60.0 | 5.11e-01 | 100.0% | 57.8% |
| 3u21A00 | 1.10.10.2430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NFRKB winged helix-like domain | 0.69 | 60.0 | 4.77e-01 | 100.0% | 53.2% |
| 7p2yd01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.66 | 58.0 | 4.73e-01 | 100.0% | 53.5% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 54.0 | 3.91e-01 | 100.0% | 54.8% |
| 3q9vA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 53.0 | 4.30e-01 | 100.0% | 48.0% |
| 1g4wR02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.65 | 50.0 | 3.38e-01 | 100.0% | 20.8% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 55.0 | 4.41e-01 | 100.0% | 77.8% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.60 | 51.0 | 4.65e-01 | 100.0% | 72.6% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.60 | 51.0 | 4.21e-01 | 100.0% | 57.6% |
| 2vj4A01 | 1.10.10.2060 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 46.0 | 4.05e-01 | 98.1% | 54.4% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 49.0 | 4.35e-01 | 100.0% | 62.2% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.58 | 39.0 | 3.14e-01 | 96.2% | 33.0% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 48.0 | 3.78e-01 | 98.1% | 95.8% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.56 | 47.0 | 3.38e-01 | 100.0% | 93.8% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 46.0 | 3.49e-01 | 100.0% | 89.6% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 47.0 | 4.23e-01 | 100.0% | 93.6% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.55 | 45.0 | 3.22e-01 | 100.0% | 89.3% |
| 8gtyA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.54 | 46.0 | 3.30e-01 | 100.0% | 41.6% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.54 | 44.0 | 3.74e-01 | 100.0% | 58.6% |
| 2pw6A00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.52 | 40.0 | 2.77e-01 | 100.0% | 29.5% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 40.0 | 3.61e-01 | 100.0% | 93.0% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079733 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 66.0 | 5.78e-01 | 100.0% | 57.3% |
| 3884711 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 65.0 | 6.04e-01 | 100.0% | 66.2% |
| 3706397 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.84 | 67.0 | 6.22e-01 | 100.0% | 69.2% |
| 5028090 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.82 | 65.0 | 4.72e-01 | 96.2% | 31.7% |
| 3893171 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.82 | 63.0 | 6.01e-01 | 100.0% | 71.7% |
| 3934874 | 101.1.1.396 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Arg_repressor | 0.81 | 61.0 | 6.04e-01 | 100.0% | 76.4% |
| 4979742 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 62.0 | 5.34e-01 | 100.0% | 53.8% |
| 3266823 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 67.0 | 6.60e-01 | 100.0% | 87.3% |
| 4979322 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.80 | 66.0 | 5.92e-01 | 100.0% | 65.7% |
| 5074546 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 65.0 | 5.40e-01 | 100.0% | 52.9% |
| 3909922 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.80 | 65.0 | 6.62e-01 | 100.0% | 92.0% |
| 3467989 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 62.0 | 5.92e-01 | 100.0% | 73.3% |
| 4957413 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.79 | 60.0 | 6.12e-01 | 100.0% | 86.0% |
| 3899987 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.79 | 59.0 | 4.99e-01 | 100.0% | 49.4% |
| 4571183 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 61.0 | 4.87e-01 | 100.0% | 42.9% |
| 3258173 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 63.0 | 6.22e-01 | 100.0% | 85.5% |
| 4978144 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.78 | 56.0 | 5.38e-01 | 100.0% | 66.7% |
| 3886202 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.78 | 64.0 | 6.37e-01 | 100.0% | 87.3% |
| 5014572 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.77 | 67.0 | 4.70e-01 | 100.0% | 32.1% |
| 4676854 | 179.1.1.1 ↗ | alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › Fer2_2 | 0.77 | 63.0 | 4.83e-01 | 100.0% | 40.9% |
| 3578362 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.77 | 62.0 | 5.54e-01 | 100.0% | 62.7% |
| 3814136 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 59.0 | 5.82e-01 | 100.0% | 80.0% |
| 3489868 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.77 | 63.0 | 5.29e-01 | 100.0% | 53.3% |
| 3366917 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.76 | 58.0 | 5.77e-01 | 100.0% | 80.0% |
| 3167709 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.76 | 67.0 | 5.18e-01 | 100.0% | 53.9% |
| 3789626 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 62.0 | 5.80e-01 | 100.0% | 73.8% |
| 3464617 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 59.0 | 5.65e-01 | 100.0% | 75.0% |
| 3453546 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 58.0 | 5.48e-01 | 100.0% | 69.2% |
| 3226857 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.75 | 62.0 | 5.28e-01 | 100.0% | 56.5% |
| 3893457 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.75 | 66.0 | 6.02e-01 | 100.0% | 75.7% |
| 3716486 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 64.0 | 5.77e-01 | 100.0% | 76.0% |
| 3924709 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.74 | 61.0 | 5.73e-01 | 100.0% | 73.8% |
| 5044657 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 55.0 | 5.34e-01 | 100.0% | 71.7% |
| 3203378 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 62.0 | 5.76e-01 | 100.0% | 73.8% |
| 4033611 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.74 | 57.0 | 6.05e-01 | 100.0% | 100.0% |
| 4947979 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 66.0 | 5.94e-01 | 100.0% | 77.1% |
| 3219370 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.73 | 62.0 | 5.49e-01 | 100.0% | 67.5% |
| 3254663 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 63.0 | 5.57e-01 | 100.0% | 66.7% |
| 4001277 | 101.35.1.7 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Oxidored-like | 0.72 | 57.0 | 5.44e-01 | 100.0% | 75.0% |
| 3822451 | 101.33.1.1 ↗ | alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › DNMT1-RFD | 0.71 | 62.0 | 4.69e-01 | 100.0% | 61.5% |
| 4944622 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 61.0 | 5.04e-01 | 100.0% | 78.9% |
| 4126690 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.70 | 52.0 | 5.20e-01 | 88.5% | 78.2% |
| 3878549 | 101.1.2.536 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 | 0.69 | 58.0 | 5.77e-01 | 100.0% | 89.1% |
| 3887965 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.69 | 58.0 | 5.77e-01 | 100.0% | 89.1% |
| 4994576 | 101.35.1.36 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF27234 | 0.69 | 57.0 | 5.28e-01 | 100.0% | 73.9% |
| 3533409 | 197.1.1.0 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like | 0.68 | 55.0 | 4.48e-01 | 100.0% | 46.1% |
| 3845947 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 56.0 | 5.41e-01 | 100.0% | 91.7% |
| 3255248 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.67 | 57.0 | 5.29e-01 | 100.0% | 75.7% |
| 4933535 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.67 | 55.0 | 3.85e-01 | 100.0% | 26.8% |
| 3588086 | 101.1.1.45 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › BrxA | 0.65 | 53.0 | 5.06e-01 | 100.0% | 78.5% |
| 3903963 | 192.29.1.225 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TRC8_N | 0.64 | 45.0 | 4.17e-01 | 80.8% | 57.1% |
| 3877844 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.62 | 51.0 | 4.41e-01 | 100.0% | 61.1% |
| 4974313 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 46.0 | 4.61e-01 | 98.1% | 80.0% |
| 4877931 | 2500.1.1.3 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like | 0.60 | 51.0 | 2.92e-01 | 100.0% | 17.3% |
| 3673226 | 622.2.1.0 ↗ | alpha bundles › YvfG-like › YvfG-like › YvfG-like | 0.59 | 45.0 | 4.45e-01 | 100.0% | 81.8% |
| 5072863 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.58 | 47.0 | 3.38e-01 | 100.0% | 89.2% |
| 3960583 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.53 | 42.0 | 3.59e-01 | 96.2% | 50.0% |
| 5079025 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.52 | 36.0 | 3.31e-01 | 76.9% | 54.3% |
| 3282651 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.52 | 41.0 | 2.41e-01 | 90.4% | 19.4% |
| 5018636 | 605.1.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2 | 0.52 | 38.0 | 3.44e-01 | 90.4% | 58.6% |