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ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00218

Bact-Vir

ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00218

Identity

Kingdom:
phage

Quality

84.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 82-215
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wfxA02 3.20.170.30 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › 0.82 55.0 6.61e-01 100.0% 100.0%
2o0pA00 3.20.170.20 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 0.75 55.0 5.92e-01 85.1% 87.7%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 24.0 3.21e-01 94.8% 64.3%
2cb4A00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.58 53.0 4.26e-01 100.0% 74.0%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 22.0 3.24e-01 82.1% 83.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5008044 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 54.0 6.43e-01 82.8% 92.6%
5061730 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 52.0 6.34e-01 80.6% 93.3%
4303698 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.84 53.0 6.25e-01 98.5% 90.4%
4125268 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.83 52.0 6.37e-01 81.3% 94.4%
4679144 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.83 53.0 6.27e-01 82.1% 90.5%
4296568 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.83 54.0 6.37e-01 84.3% 92.6%
4546240 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.83 52.0 6.33e-01 81.3% 94.4%
3783359 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.81 56.0 6.36e-01 100.0% 90.5%
5077692 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.81 55.0 6.17e-01 83.6% 87.6%
5060086 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.81 52.0 6.11e-01 100.0% 91.6%
4994805 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.81 53.0 6.07e-01 84.3% 87.4%
3106804 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.81 56.0 6.32e-01 88.8% 91.3%
4481983 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.80 52.0 5.52e-01 82.8% 73.3%
3596575 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.80 58.0 6.39e-01 100.0% 90.9%
3614840 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.79 57.0 6.27e-01 100.0% 90.0%
3663669 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.78 58.0 6.28e-01 97.0% 91.2%
5033610 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.76 71.0 5.93e-01 100.0% 90.8%
4505975 237.1.1.5 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RolB_RolC 0.67 54.0 5.01e-01 85.1% 72.1%
4682722 237.1.1.5 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RolB_RolC 0.65 51.0 4.42e-01 82.1% 56.0%
3635641 237.1.1.4 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA 0.64 59.0 5.64e-01 97.8% 86.4%
142585 237.1.1.23 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › NarE 0.60 48.0 4.71e-01 85.1% 98.6%
5069300 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.52 32.0 3.59e-01 85.8% 79.0%
D2 medium residues 1-71
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.86 65.0 4.98e-01 78.9% 42.2%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.86 64.0 5.41e-01 77.5% 72.1%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.84 68.0 5.51e-01 85.9% 63.2%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.82 66.0 5.75e-01 84.5% 70.6%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.82 62.0 4.18e-01 80.3% 75.2%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.81 60.0 4.61e-01 77.5% 67.8%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.80 59.0 4.50e-01 77.5% 60.1%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 56.0 5.23e-01 74.6% 60.5%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 60.0 5.82e-01 84.5% 87.2%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.76 52.0 4.53e-01 73.2% 48.1%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.75 52.0 4.26e-01 77.5% 40.2%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 54.0 4.95e-01 77.5% 77.1%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.73 54.0 5.98e-01 77.5% 98.2%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 55.0 4.84e-01 80.3% 74.3%
4jylA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.72 43.0 5.02e-01 73.2% 87.8%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 53.0 5.21e-01 77.5% 92.0%
1jxzC02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.72 44.0 4.72e-01 76.1% 73.3%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.71 51.0 4.37e-01 78.9% 47.0%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.71 46.0 5.45e-01 71.8% 100.0%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.71 51.0 4.71e-01 76.1% 60.4%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.70 52.0 4.79e-01 78.9% 87.9%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 47.0 5.20e-01 71.8% 100.0%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 47.0 4.64e-01 71.8% 66.7%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 51.0 5.44e-01 78.9% 96.8%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 45.0 3.25e-01 74.6% 24.3%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 49.0 5.15e-01 77.5% 96.9%
1vs5O00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.66 48.0 4.51e-01 77.5% 69.3%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.66 51.0 5.39e-01 84.5% 96.7%
1wrdA00 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 49.0 4.38e-01 78.9% 60.2%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.65 51.0 4.88e-01 84.5% 80.2%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 46.0 4.22e-01 77.5% 72.4%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.64 48.0 4.80e-01 81.7% 80.0%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.64 47.0 3.84e-01 80.3% 41.8%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.63 48.0 4.51e-01 80.3% 68.2%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 44.0 4.37e-01 74.6% 86.8%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.62 53.0 4.35e-01 95.8% 64.6%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.61 45.0 3.77e-01 77.5% 81.5%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.61 49.0 4.98e-01 88.7% 100.0%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.61 51.0 4.04e-01 91.5% 57.9%
4mycA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.60 45.0 2.99e-01 81.7% 38.1%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3236471 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.89 68.0 4.35e-01 78.9% 20.7%
3245783 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.88 67.0 3.98e-01 78.9% 13.3%
3879791 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.86 68.0 4.60e-01 83.1% 47.6%
4027464 7558.1.1.0 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.85 65.0 4.09e-01 80.3% 70.3%
4323124 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.84 63.0 3.96e-01 78.9% 17.6%
1069165 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.83 63.0 5.66e-01 80.3% 67.0%
3359095 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.81 61.0 6.03e-01 80.3% 80.0%
3244309 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.80 58.0 3.90e-01 76.1% 33.5%
4610596 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.78 55.0 5.70e-01 73.2% 80.0%
3230196 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.78 63.0 5.25e-01 87.3% 79.2%
4449117 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 59.0 5.66e-01 80.3% 76.2%
4937584 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.77 57.0 5.63e-01 77.5% 77.3%
4938250 223.1.1.122 a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA 0.77 54.0 3.85e-01 74.6% 25.7%
3186617 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.77 60.0 3.85e-01 84.5% 83.0%
3417442 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.76 55.0 3.65e-01 77.5% 48.8%
4450827 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 50.0 5.34e-01 70.4% 81.7%
3897804 7023.1.1.0 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.75 52.0 4.46e-01 73.2% 53.0%
3596117 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 60.0 5.15e-01 88.7% 66.4%
4942548 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.06e-01 98.6% 74.7%
3535165 7023.1.1.0 alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein 0.72 56.0 4.68e-01 83.1% 93.3%
4096686 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.72 50.0 4.76e-01 73.2% 62.4%
3486248 6132.1.1.0 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.72 47.0 4.92e-01 80.3% 73.8%
3969538 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 49.0 5.45e-01 76.1% 96.4%
3838316 3567.1.1.150 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › H-kinase_dim 0.69 50.0 5.00e-01 78.9% 78.7%
3884327 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.68 51.0 4.69e-01 78.9% 65.6%
3899680 3755.3.1.345 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Hobbit 0.68 53.0 4.33e-01 84.5% 45.9%
3613914 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.67 50.0 4.95e-01 78.9% 97.3%
3228000 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.66 46.0 4.56e-01 73.2% 85.3%
3462297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.08e-01 84.5% 100.0%
3229095 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 48.0 4.35e-01 84.5% 66.0%
3704 601.1.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.61 44.0 4.47e-01 78.9% 88.9%
3897805 7022.1.1.1 alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.61 47.0 3.63e-01 84.5% 36.5%
3770340 5041.1.1.2 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM169 0.61 51.0 4.46e-01 91.5% 67.6%
3195087 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.60 45.0 4.01e-01 83.1% 57.3%