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ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00238
Bact-VirALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00238
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-69
Domain cluster:
rep: OQ221545.1__WCF58069.1__PhiCrAssBcn10_1__00001__D1-78
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08302.17 best | tRNA_lig_CPD | 24.7 | 2.10e-05 | 96.9% | 13.6% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wojA00 | 3.90.1740.10 | Alpha Beta › Alpha-Beta Complex › 2',3'-cyclic nucleotide 3'-phosphodiesterase fold › 2',3'-cyclic nucleotide 3'-phosphodiesterase superfamily | 0.83 | 74.0 | 5.15e-01 | 100.0% | 53.1% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 38.0 | 4.45e-01 | 96.9% | 93.3% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 51.0 | 3.95e-01 | 96.9% | 81.3% |
| 4r9iA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.59 | 50.0 | 4.47e-01 | 100.0% | 88.0% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 39.0 | 4.04e-01 | 100.0% | 72.1% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 40.0 | 4.46e-01 | 98.5% | 93.9% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 41.0 | 4.07e-01 | 100.0% | 71.6% |
| 3dlbA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 41.0 | 3.07e-01 | 76.9% | 88.6% |
| 1mtpA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.57 | 48.0 | 4.38e-01 | 96.9% | 92.3% |
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.57 | 45.0 | 3.70e-01 | 92.3% | 80.6% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 39.0 | 3.81e-01 | 100.0% | 66.2% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.56 | 40.0 | 3.35e-01 | 75.4% | 96.6% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 41.0 | 3.24e-01 | 81.5% | 86.1% |
| 1f0cA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.56 | 47.0 | 4.01e-01 | 100.0% | 73.7% |
| 8p2aA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.56 | 44.0 | 4.09e-01 | 90.8% | 98.9% |
| 4g3wA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 38.0 | 3.13e-01 | 75.4% | 92.7% |
| 7vljA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 45.0 | 4.12e-01 | 96.9% | 92.5% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 38.0 | 3.80e-01 | 100.0% | 73.1% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 48.0 | 3.69e-01 | 100.0% | 73.8% |
| 2qzuA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 42.0 | 3.95e-01 | 92.3% | 84.7% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 36.0 | 3.70e-01 | 96.9% | 74.2% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 39.0 | 3.09e-01 | 83.1% | 80.7% |
| 8p2bA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.53 | 40.0 | 3.80e-01 | 86.2% | 98.8% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 42.0 | 3.91e-01 | 100.0% | 71.6% |
| 2eifA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 35.0 | 3.66e-01 | 98.5% | 78.0% |
| 2a8xA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 39.0 | 3.32e-01 | 86.2% | 82.8% |
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 40.0 | 3.59e-01 | 100.0% | 61.8% |
| 7zkpA01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.51 | 42.0 | 3.15e-01 | 96.9% | 36.4% |
| 1stzA03 | 3.30.390.60 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 | 0.51 | 43.0 | 3.88e-01 | 96.9% | 67.4% |
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 45.0 | 4.02e-01 | 100.0% | 84.8% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.66e-01 | 89.2% | 98.9% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 39.0 | 3.69e-01 | 100.0% | 70.1% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.50 | 38.0 | 3.16e-01 | 96.9% | 45.4% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3497100 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.83 | 76.0 | 5.01e-01 | 100.0% | 50.2% |
| 3264230 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.81 | 74.0 | 5.77e-01 | 100.0% | 61.7% |
| 3591493 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.80 | 74.0 | 5.55e-01 | 100.0% | 50.3% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.60 | 41.0 | 4.07e-01 | 100.0% | 67.1% |
| 4983389 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.60 | 43.0 | 4.32e-01 | 100.0% | 75.4% |
| 4497740 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.60 | 40.0 | 4.16e-01 | 96.9% | 75.0% |
| 5080202 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.60 | 42.0 | 3.36e-01 | 100.0% | 38.4% |
| 3988584 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.60 | 41.0 | 3.56e-01 | 100.0% | 47.0% |
| 4237578 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.59 | 41.0 | 3.37e-01 | 100.0% | 40.0% |
| 3547439 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.58 | 49.0 | 3.32e-01 | 96.9% | 35.5% |
| 4236900 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.58 | 42.0 | 3.33e-01 | 100.0% | 38.8% |
| 4156536 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.58 | 40.0 | 3.34e-01 | 100.0% | 42.7% |
| 3943796 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.57 | 39.0 | 3.70e-01 | 100.0% | 58.7% |
| 3967545 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.56 | 40.0 | 2.99e-01 | 100.0% | 30.6% |
| 4977730 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.56 | 41.0 | 4.41e-01 | 95.4% | 92.7% |
| 4633023 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.56 | 40.0 | 3.12e-01 | 100.0% | 35.0% |
| 3591052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 41.0 | 4.19e-01 | 96.9% | 81.5% |
| 3824503 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.54 | 44.0 | 3.03e-01 | 96.9% | 75.7% |
| 4029209 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 40.0 | 3.97e-01 | 100.0% | 74.3% |
| 3964664 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.54 | 37.0 | 3.73e-01 | 100.0% | 70.6% |
| 4085772 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.54 | 38.0 | 3.68e-01 | 100.0% | 65.3% |
| 3946513 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.53 | 41.0 | 3.73e-01 | 89.2% | 91.6% |
| 4610349 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.53 | 41.0 | 3.85e-01 | 100.0% | 68.8% |
| 3598659 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 42.0 | 2.68e-01 | 95.4% | 94.4% |
| 3387142 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 38.0 | 2.80e-01 | 80.0% | 57.9% |
| 4000393 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 36.0 | 3.14e-01 | 98.5% | 45.7% |
| 3510139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.51 | 39.0 | 2.86e-01 | 83.1% | 68.7% |
| 3425526 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.51 | 41.0 | 3.15e-01 | 96.9% | 49.2% |
| 4600473 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.51 | 33.0 | 2.72e-01 | 100.0% | 32.6% |
| 3970503 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.50 | 36.0 | 2.98e-01 | 100.0% | 39.5% |
| 4976249 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 37.0 | 3.13e-01 | 80.0% | 99.1% |
| 4989698 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.50 | 36.0 | 3.20e-01 | 80.0% | 69.5% |