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ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00294

Bact-Vir

ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00294

Identity

Kingdom:
phage

Quality

65.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 206-266
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.76 53.0 4.41e-01 73.8% 53.7%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 56.0 5.09e-01 80.3% 100.0%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 51.0 4.40e-01 77.0% 56.2%
1h72C02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.68 48.0 3.74e-01 75.4% 95.6%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 51.0 4.49e-01 80.3% 97.8%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.66 47.0 4.51e-01 75.4% 91.5%
2qv6A01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.66 48.0 3.84e-01 78.7% 74.2%
2nydA02 2.20.28.300 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.66 41.0 4.69e-01 73.8% 95.1%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.65 45.0 4.56e-01 75.4% 74.6%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 3.68e-01 72.1% 98.2%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.65 47.0 3.77e-01 77.0% 79.5%
1iamA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 3.84e-01 75.4% 47.1%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.63 45.0 3.71e-01 75.4% 87.3%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.62e-01 73.8% 46.3%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 42.0 3.85e-01 70.5% 95.2%
1rylA00 3.40.1760.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family 0.62 44.0 3.27e-01 75.4% 100.0%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.62 43.0 4.01e-01 73.8% 100.0%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 40.0 3.78e-01 72.1% 54.5%
5lf5A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.78e-01 73.8% 51.8%
2pifA01 3.40.1640.10 Alpha Beta › 3-Layer(aba) Sandwich › PSTPO5379-like › PSTPO5379-like 0.60 44.0 3.41e-01 78.7% 74.6%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 42.0 3.42e-01 75.4% 38.8%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 43.0 3.62e-01 77.0% 100.0%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 42.0 3.28e-01 75.4% 73.5%
4h87A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.59 41.0 3.27e-01 73.8% 85.5%
1vcaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 41.0 3.43e-01 75.4% 50.0%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 41.0 4.15e-01 75.4% 93.4%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.72e-01 77.0% 95.5%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.58 39.0 3.66e-01 73.8% 100.0%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 44.0 3.64e-01 83.6% 87.5%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.22e-01 75.4% 70.5%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 3.39e-01 75.4% 43.3%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.56 39.0 3.24e-01 73.8% 40.2%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.56 46.0 3.60e-01 96.7% 57.4%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 46.0 4.04e-01 96.7% 76.0%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 39.0 3.55e-01 77.0% 59.8%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.65e-01 83.6% 87.4%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 38.0 3.58e-01 75.4% 89.7%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.53 37.0 2.73e-01 73.8% 36.2%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 36.0 2.65e-01 73.8% 27.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4095920 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.86 61.0 4.76e-01 73.8% 100.0%
3718180 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.83 59.0 4.99e-01 73.8% 91.6%
4089959 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.80 56.0 4.14e-01 73.8% 90.0%
4111809 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.80 57.0 4.34e-01 75.4% 91.1%
1701 11.1.1.81 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set 0.70 45.0 4.19e-01 75.4% 51.3%
5065444 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 52.0 4.35e-01 80.3% 89.5%
5028999 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.67 52.0 4.42e-01 83.6% 93.0%
5035636 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.67 49.0 4.20e-01 78.7% 91.0%
5029123 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 50.0 4.42e-01 82.0% 98.9%
4174584 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.65 45.0 3.68e-01 73.8% 93.3%
5042324 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.64 44.0 3.98e-01 73.8% 56.7%
4534213 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.64 48.0 4.35e-01 82.0% 92.9%
3400462 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.64 47.0 4.80e-01 86.9% 82.8%
3572289 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.63 41.0 3.76e-01 73.8% 48.2%
3300115 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.63 46.0 3.97e-01 80.3% 60.0%
3572286 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.62 41.0 3.70e-01 73.8% 48.2%
4487906 304.56.1.2 a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.61 47.0 4.20e-01 85.2% 87.8%
3663319 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.61 51.0 3.66e-01 98.4% 66.7%
5043492 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 44.0 3.84e-01 80.3% 94.9%
3701633 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 41.0 3.75e-01 72.1% 51.8%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 45.0 3.61e-01 85.2% 64.4%
3465504 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.60 44.0 4.70e-01 88.5% 100.0%
4937786 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.60 45.0 3.85e-01 82.0% 83.0%
4042831 304.110.1.4 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N 0.59 50.0 4.33e-01 95.1% 100.0%
3470500 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 39.0 2.52e-01 70.5% 30.2%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 38.0 4.07e-01 72.1% 98.0%
166071 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 41.0 3.65e-01 83.6% 87.4%
4008166 3115.1.1.10 a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 0.55 43.0 3.92e-01 95.1% 85.3%
3213885 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.54 38.0 3.28e-01 77.0% 60.0%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.53 37.0 2.69e-01 75.4% 37.5%
4488855 275.1.1.5 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.53 36.0 3.38e-01 73.8% 97.6%
4515380 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.52 40.0 3.02e-01 83.6% 85.9%
3739999 11.1.1.646 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.52 37.0 2.93e-01 80.3% 56.7%
3237024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 36.0 3.00e-01 82.0% 38.3%
3911204 382.1.1.16 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.51 39.0 3.76e-01 90.2% 98.7%
4021799 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 35.0 2.75e-01 75.4% 48.7%
D2 high residues 281-346
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 49.0 3.85e-01 80.3% 90.7%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 42.0 3.34e-01 71.2% 93.0%
1xu0A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.61 45.0 4.02e-01 81.8% 94.1%
3vwaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 46.0 3.58e-01 84.8% 69.9%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 45.0 3.43e-01 86.4% 96.4%
8evkA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.58 42.0 3.60e-01 77.3% 60.2%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 45.0 3.22e-01 84.8% 67.0%
3eeqB03 3.30.420.180 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › CobE/GbiG C-terminal domain 0.57 46.0 4.03e-01 93.9% 95.3%
4eswA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 44.0 3.77e-01 93.9% 83.8%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 44.0 4.22e-01 97.0% 92.4%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.52 42.0 3.92e-01 90.9% 96.4%
1ti2A02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.51e-01 83.3% 36.7%
3vz3A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 41.0 2.88e-01 97.0% 87.1%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 40.0 2.84e-01 95.5% 85.4%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4006142 2008.1.1.185 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exonuc_VIII 0.68 56.0 5.22e-01 92.4% 97.6%
3937294 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.62 48.0 3.58e-01 86.4% 93.9%
3560252 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 42.0 3.27e-01 77.3% 78.0%
3607227 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.56 38.0 4.13e-01 72.7% 92.0%
3184485 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.55 47.0 4.07e-01 98.5% 67.6%
4985112 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.54 43.0 3.21e-01 86.4% 93.3%
4015010 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 44.0 3.98e-01 93.9% 96.8%
3603150 2004.1.1.220 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.52 41.0 2.94e-01 90.9% 86.1%
D3 high residues 367-441
PDB
D4 medium residues 151-205
PDB