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ALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00297
Bact-VirALT_09252017_20_scaffold_29_prodigal-single.1__X__X__00297
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-162
Domain cluster:
rep: ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00122__D1-89_218-252
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.72 | 35.0 | 3.16e-01 | 100.0% | 34.4% |
| 1uruA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.72 | 33.0 | 2.98e-01 | 100.0% | 31.6% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.64 | 33.0 | 3.59e-01 | 73.0% | 57.9% |
| 2g38B00 | 1.20.1260.20 | Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily | 0.63 | 37.0 | 3.56e-01 | 100.0% | 51.4% |
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.61 | 34.0 | 3.20e-01 | 97.4% | 44.1% |
| 1dowA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 43.0 | 3.93e-01 | 73.0% | 98.5% |
| 3qweA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.60 | 36.0 | 3.02e-01 | 100.0% | 35.0% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 38.0 | 3.84e-01 | 97.4% | 63.8% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 35.0 | 3.96e-01 | 90.8% | 77.9% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 38.0 | 4.51e-01 | 87.5% | 97.1% |
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 36.0 | 4.05e-01 | 84.2% | 77.9% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.57 | 36.0 | 4.04e-01 | 78.3% | 80.7% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 34.0 | 4.15e-01 | 75.0% | 91.8% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.56 | 33.0 | 3.66e-01 | 73.7% | 69.6% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.56 | 36.0 | 3.96e-01 | 83.6% | 79.8% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.56 | 35.0 | 3.96e-01 | 77.6% | 83.0% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.56 | 41.0 | 4.52e-01 | 94.7% | 99.1% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.54 | 35.0 | 3.95e-01 | 73.7% | 83.8% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.54 | 38.0 | 3.86e-01 | 70.4% | 84.9% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 29.0 | 3.22e-01 | 92.8% | 62.7% |
| 1wvtA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.54 | 39.0 | 4.04e-01 | 94.7% | 77.0% |
| 4l0fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 46.0 | 3.31e-01 | 100.0% | 32.0% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.54 | 31.0 | 2.79e-01 | 99.3% | 39.7% |
| 2z1qB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 36.0 | 3.85e-01 | 81.6% | 76.5% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.54 | 33.0 | 3.73e-01 | 78.3% | 81.4% |
| 4cbeA00 | 1.20.120.1640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 37.0 | 3.40e-01 | 71.7% | 66.5% |
| 7zo9A01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.53 | 47.0 | 3.71e-01 | 96.7% | 51.4% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.53 | 39.0 | 3.95e-01 | 94.7% | 77.5% |
| 4tkrA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.52 | 44.0 | 4.15e-01 | 91.4% | 90.7% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 35.0 | 3.54e-01 | 84.2% | 67.8% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.52 | 37.0 | 3.13e-01 | 100.0% | 45.3% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.52 | 27.0 | 3.44e-01 | 75.0% | 89.2% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.52 | 37.0 | 3.78e-01 | 96.7% | 74.8% |
| 6gyhA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 44.0 | 3.86e-01 | 94.7% | 84.9% |
| 8h8jC01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 42.0 | 3.51e-01 | 90.1% | 90.0% |
| 2qr4A01 | 1.20.140.70 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain | 0.50 | 38.0 | 3.80e-01 | 78.3% | 87.8% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 26.0 | 3.33e-01 | 83.6% | 91.0% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.50 | 34.0 | 3.75e-01 | 78.3% | 88.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4987618 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.83 | 33.0 | 3.84e-01 | 100.0% | 50.4% |
| 4345163 | 633.10.1.28 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › PF27080 | 0.76 | 56.0 | 6.35e-01 | 94.1% | 100.0% |
| 4983663 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.71 | 31.0 | 4.02e-01 | 95.4% | 71.4% |
| 4983374 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.68 | 36.0 | 3.93e-01 | 91.4% | 60.0% |
| 4999330 | 604.12.1.135 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 | 0.66 | 40.0 | 4.73e-01 | 82.9% | 90.0% |
| 5065535 | 3542.1.1.0 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases | 0.64 | 50.0 | 4.09e-01 | 80.9% | 56.2% |
| 3640577 | 7516.1.1.109 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_1, Chitin_synth_2 | 0.63 | 56.0 | 3.82e-01 | 98.0% | 35.8% |
| 3785903 | 7516.1.1.70 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_1 | 0.61 | 53.0 | 3.53e-01 | 94.7% | 34.7% |
| None | — | 0.59 | 51.0 | 3.46e-01 | 94.1% | 31.2% | |
| 2324029 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.57 | 36.0 | 3.97e-01 | 79.6% | 77.0% |
| 4342285 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.57 | 48.0 | 3.75e-01 | 90.1% | 80.0% |
| 3978880 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.56 | 48.0 | 3.80e-01 | 91.4% | 82.9% |
| 4004375 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.56 | 48.0 | 3.79e-01 | 91.4% | 82.9% |
| 3387089 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.55 | 46.0 | 3.69e-01 | 89.5% | 82.6% |
| 3827313 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.55 | 39.0 | 4.50e-01 | 94.7% | 100.0% |
| 3232632 | 633.10.1.15 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 | 0.55 | 40.0 | 4.29e-01 | 86.2% | 87.7% |
| 3029523 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.54 | 43.0 | 3.59e-01 | 86.2% | 71.5% |
| 3607681 | 633.10.1.15 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › Transmemb_17 | 0.53 | 44.0 | 4.61e-01 | 100.0% | 98.5% |
| 3226467 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 40.0 | 4.23e-01 | 82.9% | 88.1% |
| 3731299 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 49.0 | 4.36e-01 | 100.0% | 93.8% |
| 5059276 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.53 | 37.0 | 3.95e-01 | 76.3% | 82.3% |
| 3921635 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.52 | 40.0 | 3.69e-01 | 91.4% | 63.2% |
| 3616490 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 47.0 | 4.81e-01 | 100.0% | 100.0% |
| 3495474 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 48.0 | 4.41e-01 | 99.3% | 94.4% |
| 3972403 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 47.0 | 4.27e-01 | 100.0% | 93.0% |
| 3192289 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.51 | 43.0 | 4.08e-01 | 89.5% | 94.9% |
| 3937015 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 46.0 | 4.09e-01 | 100.0% | 84.1% |
| 4984083 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 44.0 | 4.04e-01 | 96.7% | 92.7% |
| 3510900 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 44.0 | 3.93e-01 | 94.1% | 86.7% |