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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00004
Bact-VirALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00004
Identity
- Kingdom:
- phage
Quality
95.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-71
Domain cluster:
rep: FFC_09252017_16_scaffold_13_prodigal-single.1__X__X__00050__D8-73
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c18A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 35.0 | 2.99e-01 | 100.0% | 37.4% |
| 1vwxg01 | 6.20.370.70 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.52 | 28.0 | 3.31e-01 | 100.0% | 89.2% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 37.0 | 3.09e-01 | 81.2% | 60.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029991 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 41.0 | 2.66e-01 | 78.3% | 98.2% |
| 3654553 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.55 | 39.0 | 2.75e-01 | 78.3% | 40.9% |
| 3521771 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.55 | 26.0 | 3.23e-01 | 82.6% | 93.3% |
D2
high
residues 77-133
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rl4B00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.62 | 46.0 | 3.31e-01 | 78.9% | 76.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3725291 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.62 | 39.0 | 3.34e-01 | 91.2% | 38.9% |
| 3744865 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 35.0 | 3.45e-01 | 82.5% | 58.3% |
| 389331 | 386.1.1.13 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Sgf11,Sgf11_N | 0.55 | 37.0 | 3.25e-01 | 100.0% | 44.1% |
| 3851347 | 101.1.2.235 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nlrc4-like_WHD | 0.52 | 36.0 | 3.38e-01 | 71.9% | 75.7% |
| 3363857 | 7559.1.1.1 ↗ | a/b three-layered sandwiches › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal protein L4 › Ribosomal_L4 | 0.52 | 37.0 | 2.88e-01 | 86.0% | 32.1% |
| 5063200 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.38e-01 | 80.7% | 70.6% |