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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00006

Bact-Vir

ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00006

Identity

Kingdom:
phage

Quality

63.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 362-452
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.79 69.0 7.01e-01 100.0% 95.5%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.77 70.0 7.05e-01 100.0% 98.9%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.76 64.0 6.65e-01 95.6% 98.8%
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.75 69.0 6.61e-01 100.0% 94.2%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.74 69.0 6.45e-01 100.0% 86.2%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.73 66.0 6.64e-01 100.0% 100.0%
5tk2B00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.70 48.0 4.90e-01 79.1% 72.7%
3g5wA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.69 52.0 4.28e-01 79.1% 66.3%
1zpuA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.69 52.0 4.00e-01 79.1% 70.7%
2xu9A03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.69 51.0 4.57e-01 79.1% 73.4%
4knuA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.68 51.0 4.21e-01 79.1% 71.7%
3gdcA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.67 50.0 4.48e-01 79.1% 76.9%
2g23K04 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.66 50.0 3.91e-01 79.1% 79.5%
5e9aB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 43.0 5.09e-01 89.0% 100.0%
2r7eB02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.65 48.0 4.16e-01 79.1% 81.5%
4oifA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 42.0 4.93e-01 87.9% 100.0%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 42.0 4.90e-01 89.0% 100.0%
7wguB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.62 43.0 4.37e-01 78.0% 72.5%
2dv6A02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 52.0 3.60e-01 94.5% 84.8%
4f2eA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.61 47.0 4.62e-01 83.5% 76.5%
5fc9A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.58 44.0 4.37e-01 80.2% 82.1%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.30e-01 81.3% 73.5%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 42.0 4.17e-01 80.2% 97.0%
1sddA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 41.0 3.97e-01 79.1% 82.2%
1j0hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 41.0 4.30e-01 83.5% 98.8%
3zo9B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 4.04e-01 81.3% 97.9%
5jtwB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.86e-01 91.2% 67.9%
5z0uA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 39.0 3.98e-01 79.1% 92.2%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 33.0 3.81e-01 85.7% 98.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.79 69.0 7.10e-01 100.0% 97.7%
185692 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.74 69.0 6.45e-01 100.0% 86.2%
4937997 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.71 48.0 5.07e-01 80.2% 77.5%
1243672 3156.1.1.13 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.70 48.0 4.77e-01 79.1% 66.7%
1169974 3156.1.1.8 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 0.69 52.0 4.08e-01 79.1% 57.1%
4937676 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.69 46.0 4.80e-01 80.2% 74.7%
3952691 3156.1.1.8 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 0.67 50.0 4.51e-01 79.1% 72.6%
4585321 12.1.1.6 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_42C 0.64 44.0 5.05e-01 90.1% 98.5%
4645680 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 43.0 4.75e-01 79.1% 94.3%
5040473 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.61 45.0 4.37e-01 79.1% 72.4%
4929501 3156.1.1.13 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.61 47.0 4.47e-01 81.3% 74.3%
4286724 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.60 54.0 3.83e-01 100.0% 60.6%
4926867 3156.1.1.3 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind 0.60 46.0 4.08e-01 81.3% 63.6%
3393640 11.1.1.385 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ASH 0.56 41.0 3.80e-01 78.0% 64.2%
3344608 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 45.0 4.37e-01 84.6% 95.0%
3421120 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 41.0 3.23e-01 81.3% 49.8%
3766058 11.1.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M 0.53 40.0 3.62e-01 92.3% 56.9%
4063416 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 46.0 4.11e-01 96.7% 73.8%
5035678 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.90e-01 91.2% 80.8%
D2 medium residues 16-54
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18454.8 best Mtd_N 43.3 3.70e-11 89.7% 89.2%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.79 64.0 5.95e-01 100.0% 72.5%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.73 59.0 5.39e-01 94.9% 67.3%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.68 56.0 5.47e-01 97.4% 88.4%
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 48.0 2.87e-01 92.3% 27.8%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.09e-01 76.9% 35.7%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 39.0 2.28e-01 71.8% 69.8%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 42.0 3.14e-01 100.0% 96.4%
3gzbA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 2.70e-01 76.9% 26.0%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.55 39.0 2.67e-01 82.1% 51.5%
1qhbA00 1.10.606.10 Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 0.54 37.0 2.08e-01 74.4% 16.6%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 3.84e-01 87.2% 75.0%
2gtiA02 3.40.50.11580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › nsp15 middle domain 0.51 39.0 2.94e-01 94.9% 38.2%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 3.34e-01 97.4% 50.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002640 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 1.00 94.0 8.46e-01 100.0% 78.0%
2905173 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.91 81.0 7.26e-01 100.0% 72.2%
3917719 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.70 55.0 5.39e-01 94.9% 82.2%
1281772 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.68 56.0 5.12e-01 97.4% 70.4%
None 0.64 46.0 2.92e-01 82.1% 46.5%
4983462 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 51.0 4.43e-01 100.0% 81.5%
4530421 2007.1.14.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.61 44.0 2.93e-01 82.1% 29.1%
5036081 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.60 47.0 3.00e-01 100.0% 21.6%
3527717 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 46.0 4.31e-01 94.9% 81.1%
3594220 375.1.8.2 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F › zf-CHCC 0.58 43.0 3.31e-01 82.1% 41.1%
4021212 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 44.0 2.52e-01 87.2% 71.8%
5017559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 3.86e-01 89.7% 95.4%
4678772 275.1.1.0 a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.56 39.0 3.50e-01 76.9% 63.3%
3506230 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 2.85e-01 94.9% 38.6%
3923745 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.54 38.0 2.93e-01 89.7% 72.0%
3593665 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 40.0 2.60e-01 87.2% 41.5%
3381699 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.51 37.0 2.64e-01 76.9% 30.0%
3742535 59.1.1.2 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 0.51 35.0 2.93e-01 74.4% 92.0%
4096635 2484.1.1.308 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TNP-like_RNaseH_N, TNP-like_RNaseH_C 0.50 37.0 2.29e-01 89.7% 24.8%
D3 medium residues 73-122
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.79 59.0 6.25e-01 94.0% 95.3%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.76 60.0 5.83e-01 100.0% 80.0%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.74 62.0 4.54e-01 94.0% 45.6%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.72 57.0 5.69e-01 100.0% 86.3%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.70 57.0 4.32e-01 94.0% 48.0%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 57.0 4.44e-01 98.0% 42.1%
3fveA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.68 55.0 4.18e-01 94.0% 48.1%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 54.0 3.84e-01 100.0% 29.1%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.68 59.0 4.60e-01 100.0% 100.0%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 50.0 4.04e-01 86.0% 47.7%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.67 46.0 5.08e-01 84.0% 94.9%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.66 53.0 3.92e-01 94.0% 42.9%
4lpqA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.65 41.0 3.13e-01 78.0% 24.8%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.65 49.0 3.43e-01 84.0% 25.4%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 50.0 3.15e-01 90.0% 91.1%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.64 45.0 4.73e-01 76.0% 90.5%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 48.0 3.89e-01 84.0% 50.0%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.64 55.0 3.92e-01 100.0% 33.3%
1wdjA00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.63 53.0 3.69e-01 100.0% 28.5%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.63 51.0 3.99e-01 98.0% 74.2%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.63 46.0 3.71e-01 100.0% 39.4%
2otnB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 47.0 3.61e-01 96.0% 45.9%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.60 43.0 3.92e-01 96.0% 56.5%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 45.0 2.83e-01 82.0% 91.0%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 49.0 4.11e-01 100.0% 54.5%
1uoyA01 2.30.130.50 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.60 43.0 4.23e-01 98.0% 71.9%
3c1yA01 3.40.1700.10 Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain 0.58 48.0 3.56e-01 96.0% 76.1%
3kd6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 46.0 2.99e-01 100.0% 18.0%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 46.0 3.62e-01 100.0% 60.3%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.58 40.0 3.53e-01 76.0% 47.0%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.83e-01 94.0% 22.9%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.56 48.0 3.38e-01 100.0% 97.7%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 46.0 3.73e-01 94.0% 51.0%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 39.0 4.05e-01 80.0% 95.5%
3h37A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 41.0 3.06e-01 84.0% 69.7%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.55 47.0 3.16e-01 98.0% 82.7%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 39.0 3.31e-01 78.0% 90.0%
4bubA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 36.0 2.39e-01 100.0% 15.2%
2f09A00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.54 40.0 3.51e-01 82.0% 67.1%
3l4eA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 36.0 2.53e-01 70.0% 59.9%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.66e-01 84.0% 48.2%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 43.0 2.63e-01 100.0% 98.8%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 38.0 2.78e-01 86.0% 53.3%
4uriA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 40.0 3.78e-01 82.0% 74.6%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 34.0 3.39e-01 74.0% 61.8%
4paaA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 43.0 3.09e-01 100.0% 61.8%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 39.0 3.52e-01 82.0% 78.6%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.59e-01 96.0% 20.5%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 37.0 2.41e-01 82.0% 47.4%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 39.0 3.51e-01 88.0% 75.0%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.58e-01 98.0% 23.7%
4epsA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.51 39.0 3.19e-01 100.0% 71.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.16e-01 100.0% 37.9%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.56e-01 98.0% 26.4%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989853 77.1.1.13 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.85 64.0 3.81e-01 100.0% 12.7%
3989854 3761.1.1.4 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR 0.84 62.0 5.19e-01 100.0% 47.1%
3405960 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.80 61.0 6.50e-01 96.0% 97.7%
3900165 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.80 63.0 6.65e-01 96.0% 100.0%
3987740 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.80 59.0 6.44e-01 98.0% 100.0%
3917719 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.79 61.0 6.37e-01 96.0% 95.6%
1281772 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.79 62.0 6.11e-01 100.0% 81.5%
3528795 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.78 60.0 6.27e-01 100.0% 93.3%
1505155 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.76 60.0 5.83e-01 100.0% 78.6%
3514431 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.76 50.0 5.41e-01 70.0% 85.0%
3233229 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.76 51.0 5.51e-01 76.0% 87.5%
3623217 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.75 59.0 5.99e-01 100.0% 90.0%
3921177 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.73 54.0 5.28e-01 100.0% 72.7%
3791485 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.73 52.0 3.25e-01 76.0% 15.7%
4241370 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.73 57.0 4.93e-01 88.0% 63.7%
3541285 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.72 48.0 4.60e-01 76.0% 58.3%
1107990 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.72 57.0 5.73e-01 100.0% 88.0%
3893040 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.72 48.0 5.02e-01 70.0% 82.2%
3620101 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.71 51.0 4.56e-01 76.0% 57.1%
3893051 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.71 45.0 5.04e-01 76.0% 94.3%
4512216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 53.0 5.31e-01 86.0% 80.0%
3227340 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.25e-01 98.0% 33.3%
4399997 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.69 58.0 4.22e-01 98.0% 42.0%
4999472 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 52.0 3.59e-01 100.0% 22.6%
5079606 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.69 58.0 4.08e-01 98.0% 39.6%
391086 208.1.1.4 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.68 50.0 3.40e-01 80.0% 43.2%
3398945 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.68 45.0 3.48e-01 76.0% 29.2%
3407018 391.1.2.11 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.68 46.0 4.39e-01 76.0% 60.0%
5002640 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.67 57.0 5.78e-01 100.0% 96.0%
4263214 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 55.0 5.33e-01 100.0% 98.3%
4088743 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 57.0 5.42e-01 100.0% 93.3%
3603282 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.66 55.0 3.98e-01 98.0% 40.6%
5049691 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 49.0 3.99e-01 84.0% 48.0%
3232262 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.65 55.0 4.39e-01 100.0% 68.2%
5015266 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 54.0 5.01e-01 96.0% 96.9%
5052723 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 37.0 3.23e-01 100.0% 32.5%
3196528 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 49.0 4.68e-01 86.0% 85.0%
3967702 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.64 52.0 4.11e-01 100.0% 51.2%
4604249 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.64 49.0 4.12e-01 86.0% 60.0%
4492624 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 53.0 5.23e-01 100.0% 100.0%
5079980 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 52.0 3.55e-01 100.0% 25.8%
4972261 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 46.0 3.47e-01 84.0% 38.5%
4286824 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.62 47.0 3.95e-01 86.0% 61.1%
4183358 2006.1.1.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.61 52.0 3.70e-01 100.0% 47.3%
5012372 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.61 52.0 3.70e-01 100.0% 47.3%
3545467 391.1.2.10 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st 0.60 41.0 4.40e-01 76.0% 90.0%
4587906 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.60 45.0 3.73e-01 86.0% 55.0%
3882924 12.5.1.6 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FIIND 0.60 51.0 3.80e-01 100.0% 60.0%
3799250 5.1.5.105 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.59 50.0 2.95e-01 96.0% 95.4%
3942382 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.59 49.0 4.25e-01 92.0% 72.0%
3810368 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.58 47.0 3.30e-01 100.0% 25.1%
4195481 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.58 43.0 3.68e-01 86.0% 61.1%
3841972 6043.1.1.4 a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.57 42.0 3.17e-01 84.0% 50.0%
3736958 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.90e-01 98.0% 88.6%
3222477 101.1.2.712 alpha arrays › HTH › HTH › winged helix domain › FNIP_C 0.56 47.0 3.08e-01 100.0% 35.6%
3524157 5.1.4.628 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WDR90_beta-prop_4th 0.56 46.0 2.84e-01 98.0% 85.0%
4423027 2484.1.1.55 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.56 46.0 3.18e-01 100.0% 25.9%
3715600 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.75e-01 98.0% 23.7%
4990144 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.91e-01 98.0% 99.0%
4055607 244.1.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.54 45.0 3.27e-01 100.0% 66.5%
None 0.53 45.0 2.68e-01 100.0% 44.0%
4477489 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 45.0 3.30e-01 100.0% 67.6%
3938847 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.52 41.0 2.50e-01 98.0% 49.7%
4261505 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.52 39.0 3.65e-01 84.0% 84.6%
3616581 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.52 42.0 2.68e-01 100.0% 81.0%
3509919 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.51 41.0 2.75e-01 100.0% 75.8%
4003164 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.51 40.0 2.62e-01 100.0% 52.2%
5008254 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.50 39.0 3.58e-01 90.0% 74.3%