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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00042

Bact-Vir

ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00042

Identity

Kingdom:
phage

Quality

79.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-185
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ksvA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.61 48.0 4.80e-01 98.9% 80.0%
1mwyA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 20.0 3.41e-01 75.0% 80.8%
1ex0B02 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.60 52.0 4.27e-01 90.2% 74.2%
7uzsX02 3.90.260.10 Alpha Beta › Alpha-Beta Complex › Coagulation Factor XIII; Chain A, domain 2 › Transglutaminase-like 0.59 51.0 4.33e-01 90.2% 75.2%
2hlyA00 3.10.550.10 Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 0.59 46.0 4.45e-01 81.0% 77.1%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.58 46.0 3.91e-01 82.6% 65.4%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 26.0 3.53e-01 83.7% 81.8%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.53 26.0 3.46e-01 70.1% 91.0%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.50 27.0 3.54e-01 73.4% 95.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3609894 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.64 45.0 4.65e-01 88.6% 76.3%
5034081 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.63 50.0 4.62e-01 82.1% 69.1%
3574840 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 41.0 4.65e-01 83.7% 84.8%
5078298 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.61 49.0 4.68e-01 83.2% 75.2%
5078649 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.61 50.0 4.89e-01 85.3% 86.0%
3848944 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 52.0 3.90e-01 90.2% 54.0%
3888351 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.61 52.0 4.26e-01 90.2% 71.4%
3870848 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 3.83e-01 90.2% 53.4%
3408439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 3.81e-01 90.2% 54.2%
3502702 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.60 51.0 4.25e-01 89.1% 76.0%
3260465 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.58 47.0 3.88e-01 83.2% 67.1%
3359953 219.1.1.71 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.55 41.0 4.22e-01 77.2% 90.3%
3280378 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 31.0 3.30e-01 98.9% 63.0%
3465950 219.1.1.71 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 0.53 40.0 3.93e-01 77.7% 87.7%
D2 medium residues 186-329
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hw2A00 3.20.170.40 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Rifampin ADP-ribosyltransferase domain 0.65 42.0 4.37e-01 79.2% 68.8%
2auaA01 3.20.170.10 Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › ADP-ribosylation domain 0.64 42.0 4.73e-01 99.3% 88.0%
1bcpA00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.63 49.0 4.18e-01 80.6% 62.5%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.62 48.0 4.07e-01 79.9% 56.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2495192 237.1.1.11 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.63 49.0 4.75e-01 81.9% 91.9%
3059252 237.1.1.11 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.63 47.0 4.61e-01 78.5% 91.7%
2491400 237.1.1.11 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES 0.62 46.0 4.64e-01 77.8% 91.7%
4995698 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.59 38.0 4.50e-01 78.5% 95.0%
3378730 237.1.1.0 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation 0.55 48.0 4.22e-01 100.0% 64.0%
D3 medium residues 330-433
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 45.0 4.08e-01 75.0% 47.0%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 43.0 4.41e-01 73.1% 61.0%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 42.0 3.96e-01 74.0% 48.4%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 42.0 3.90e-01 76.9% 46.9%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 43.0 4.06e-01 76.0% 50.4%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 44.0 4.21e-01 74.0% 54.5%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 39.0 3.45e-01 74.0% 38.5%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 42.0 3.52e-01 74.0% 38.2%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 45.0 4.05e-01 77.9% 50.4%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 42.0 3.89e-01 73.1% 50.8%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 40.0 3.75e-01 72.1% 48.8%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 42.0 3.71e-01 75.0% 45.3%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 44.0 3.96e-01 76.0% 51.8%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 42.0 3.77e-01 76.0% 48.6%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 41.0 3.68e-01 76.0% 47.2%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.64 41.0 3.84e-01 74.0% 53.6%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 40.0 3.57e-01 73.1% 45.3%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 50.0 3.98e-01 83.7% 85.7%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.62 39.0 3.61e-01 75.0% 50.8%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 38.0 3.54e-01 73.1% 47.4%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.61 44.0 3.54e-01 74.0% 60.8%
6ihjC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 3.89e-01 79.8% 81.5%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.60 41.0 3.74e-01 71.2% 84.4%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.92e-01 72.1% 86.7%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.79e-01 75.0% 80.9%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.48e-01 74.0% 45.1%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.66e-01 75.0% 51.7%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.57e-01 73.1% 78.4%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 39.0 2.87e-01 71.2% 28.1%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.56 39.0 3.45e-01 75.0% 50.7%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.56 40.0 3.55e-01 78.8% 53.5%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 38.0 3.54e-01 70.2% 89.1%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.53e-01 71.2% 76.5%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.55 38.0 3.58e-01 71.2% 77.8%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.55e-01 74.0% 54.6%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.53 35.0 3.48e-01 83.7% 65.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964215 897.2.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › Adhesin_E 0.71 47.0 4.55e-01 76.9% 60.9%
3848773 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.68 42.0 3.55e-01 73.1% 38.8%
4472109 243.1.1.103 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF30257 0.68 43.0 4.12e-01 72.1% 55.8%
3217508 243.1.1.97 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_N 0.68 41.0 3.87e-01 71.2% 51.2%
3507768 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 47.0 4.79e-01 72.1% 79.0%
3740523 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.66 44.0 3.70e-01 75.0% 43.0%
3513177 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 45.0 4.51e-01 71.2% 72.4%
3690324 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 45.0 4.05e-01 79.8% 53.6%
3724449 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 44.0 4.70e-01 71.2% 81.1%
4157765 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.64 45.0 3.65e-01 75.0% 40.5%
3293799 243.1.1.24 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ARC6-like_IMS 0.63 43.0 3.78e-01 73.1% 48.7%
3504070 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.63 41.0 3.61e-01 72.1% 46.9%
3729993 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.63 41.0 3.83e-01 73.1% 53.8%
3182995 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 44.0 4.17e-01 74.0% 62.5%
3514330 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 47.0 4.79e-01 83.7% 82.0%
3377619 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.61 45.0 3.65e-01 76.9% 42.9%
3520975 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 42.0 4.30e-01 72.1% 74.0%
3514245 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 47.0 4.55e-01 84.6% 74.8%
3433806 5.1.2.29 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.59 47.0 3.68e-01 85.6% 40.0%
3901207 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 38.0 3.84e-01 71.2% 65.0%
3725346 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.58 43.0 3.98e-01 76.9% 94.6%
4593105 243.1.1.3 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Scytalone_dh 0.58 41.0 3.88e-01 75.0% 60.8%
3589048 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.56 39.0 3.55e-01 72.1% 72.1%
3273857 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.56 40.0 3.57e-01 73.1% 80.4%
3189800 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 38.0 3.42e-01 72.1% 51.0%
3840079 4998.1.1.1 beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.55 45.0 3.96e-01 88.5% 76.7%
3550844 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 40.0 3.44e-01 76.9% 92.5%
3505113 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 40.0 4.00e-01 81.7% 76.9%
5041901 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.22e-01 98.1% 70.0%
3726479 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 37.0 3.32e-01 73.1% 53.8%
4982275 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.01e-01 99.0% 69.6%
3189419 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.52 46.0 3.36e-01 98.1% 45.7%
3497884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 35.0 3.57e-01 70.2% 73.3%
3301714 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.52 44.0 3.22e-01 99.0% 76.4%
5057162 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.51 36.0 3.38e-01 72.1% 68.8%
3806458 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 35.0 3.11e-01 72.1% 50.3%
5035575 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.69e-01 71.2% 95.7%
3496098 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 36.0 3.09e-01 73.1% 98.1%