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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00071

Bact-Vir

ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00071

Identity

Kingdom:
phage

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-84
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.79 64.0 6.60e-01 94.1% 93.8%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 58.0 5.16e-01 94.1% 56.2%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 64.0 5.90e-01 94.1% 78.1%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.74 67.0 5.25e-01 100.0% 89.3%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 65.0 6.25e-01 100.0% 86.2%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.73 55.0 5.55e-01 88.2% 82.4%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 61.0 5.83e-01 94.1% 83.1%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.71 58.0 5.36e-01 94.1% 69.7%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 57.0 5.43e-01 94.1% 95.0%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.68 54.0 4.05e-01 94.1% 46.2%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.64 42.0 3.86e-01 78.4% 50.0%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.64 51.0 4.58e-01 96.1% 61.5%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 57.0 4.91e-01 100.0% 65.4%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.63 53.0 4.54e-01 100.0% 58.8%
2j5iA02 6.10.250.2850 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 43.0 4.78e-01 100.0% 97.4%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.62 53.0 3.88e-01 100.0% 42.2%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.62 53.0 3.92e-01 100.0% 42.7%
1w36C06 1.10.10.990 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 46.0 4.15e-01 86.3% 77.8%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.59 52.0 4.27e-01 100.0% 98.9%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 52.0 5.10e-01 100.0% 91.1%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 46.0 3.68e-01 100.0% 40.0%
3cvvA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 45.0 3.48e-01 94.1% 99.2%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 49.0 3.17e-01 100.0% 28.2%
1tf5A04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.51 41.0 2.94e-01 100.0% 41.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3686172 109.4.1.496 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 0.85 69.0 3.81e-01 88.2% 7.4%
4957831 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.85 64.0 4.35e-01 94.1% 24.8%
3260684 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.81 67.0 6.59e-01 94.1% 85.5%
3746144 192.29.1.273 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NICE-3 0.79 68.0 6.26e-01 96.1% 87.7%
4053331 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.78 70.0 4.26e-01 100.0% 27.7%
4198585 5059.1.1.2 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Multi_Drug_Res 0.76 67.0 5.08e-01 100.0% 86.7%
4129922 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.74 66.0 5.27e-01 100.0% 84.0%
3513381 4082.1.1.0 ↗ alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain 0.67 55.0 5.22e-01 100.0% 76.7%
3996388 4146.1.1.11 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › Bestrophin 0.67 46.0 4.36e-01 72.5% 61.7%
4030508 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.63 49.0 2.95e-01 96.1% 11.6%
3927675 2004.1.1.600 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn, AAA_21 0.60 49.0 2.83e-01 100.0% 9.6%