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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00102

Bact-Vir

ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00102

Identity

Kingdom:
phage

Quality

71.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-19_83-150_173-190
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.76 59.0 6.14e-01 81.9% 99.0%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.73 56.0 5.39e-01 81.0% 90.8%
3kbtA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 57.0 4.08e-01 81.9% 37.3%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.72 53.0 4.51e-01 76.2% 59.0%
2b0hA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.71 55.0 5.16e-01 81.9% 71.9%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.70 54.0 5.27e-01 81.9% 85.5%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.70 51.0 4.94e-01 75.2% 89.7%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 50.0 4.29e-01 74.3% 88.6%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 53.0 5.46e-01 80.0% 100.0%
1v9dB00 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.70 53.0 3.77e-01 81.0% 56.1%
2d4xA00 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.70 49.0 3.82e-01 72.4% 52.3%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.69 44.0 4.10e-01 80.0% 51.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.69 54.0 5.40e-01 81.9% 93.4%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 53.0 5.30e-01 81.9% 92.7%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 53.0 5.29e-01 81.0% 94.3%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.68 49.0 4.63e-01 75.2% 68.8%
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.68 52.0 5.55e-01 80.0% 96.7%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 52.0 5.26e-01 81.0% 99.0%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 4.98e-01 76.2% 94.1%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 52.0 5.32e-01 81.9% 100.0%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.67 56.0 3.92e-01 91.4% 76.8%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 45.0 4.86e-01 98.1% 82.2%
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.66 49.0 4.43e-01 79.0% 67.1%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 51.0 4.25e-01 81.9% 76.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 49.0 4.96e-01 81.0% 96.1%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 46.0 4.45e-01 78.1% 67.2%
4d8mA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.64 51.0 4.07e-01 86.7% 81.0%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.64 45.0 4.29e-01 79.0% 61.9%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.70e-01 74.3% 94.9%
3m0fB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 44.0 4.22e-01 72.4% 70.7%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 4.38e-01 78.1% 94.3%
3fb2A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 4.60e-01 78.1% 94.3%
1xdpA01 1.20.58.310 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Polyphosphate kinase N-terminal domain 0.61 45.0 4.54e-01 78.1% 91.4%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 45.0 3.98e-01 77.1% 67.1%
2ccyA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.60 46.0 4.33e-01 81.0% 78.0%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 47.0 4.16e-01 83.8% 95.3%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.58 44.0 4.31e-01 82.9% 88.2%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 43.0 4.22e-01 79.0% 93.7%
1elrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 4.37e-01 100.0% 84.4%
4a64C03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.50 39.0 4.01e-01 82.9% 96.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3504303 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.79 59.0 6.07e-01 77.1% 97.0%
3197870 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.77 60.0 5.48e-01 81.9% 85.9%
3899930 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.75 59.0 4.65e-01 81.0% 81.0%
4954575 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.75 58.0 6.23e-01 80.0% 95.6%
3511320 604.6.1.31 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › HB_ELP1 0.75 55.0 4.62e-01 75.2% 60.6%
None 0.75 60.0 4.61e-01 83.8% 83.6%
3800506 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.74 55.0 5.36e-01 77.1% 86.1%
3876659 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 57.0 4.18e-01 80.0% 40.7%
3482265 601.19.1.36 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF4455 0.73 57.0 4.65e-01 81.9% 77.9%
3171295 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 56.0 3.35e-01 81.0% 14.5%
3273401 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 53.0 4.24e-01 78.1% 94.6%
3940794 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 55.0 5.26e-01 81.9% 90.0%
3784566 604.1.1.191 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29057 0.71 53.0 5.43e-01 77.1% 94.0%
3898385 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 55.0 4.84e-01 81.9% 70.0%
3233670 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.69 54.0 4.82e-01 81.9% 71.0%
3909538 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.69 52.0 5.28e-01 79.0% 95.2%
3372974 3684.1.1.2 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.69 53.0 3.97e-01 81.9% 56.9%
3340986 601.51.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin 0.69 53.0 4.29e-01 81.9% 65.5%
3498783 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 53.0 4.25e-01 81.9% 49.8%
3862749 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 53.0 4.93e-01 81.9% 83.1%
3406588 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.68 53.0 4.33e-01 81.9% 71.8%
3925622 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.67 55.0 4.30e-01 89.5% 85.1%
54459 601.3.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.67 42.0 3.89e-01 80.0% 48.2%
3513743 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.66 47.0 4.19e-01 74.3% 62.0%
2035464 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.66 51.0 5.02e-01 81.9% 95.5%
3347110 3684.1.1.2 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.65 55.0 4.28e-01 94.3% 98.4%
3591919 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 58.0 3.85e-01 98.1% 34.7%
3466653 192.29.1.101 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Rx_N 0.63 43.0 4.23e-01 70.5% 73.0%
3935030 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 47.0 4.77e-01 81.9% 98.1%
3214534 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.62 45.0 4.34e-01 77.1% 74.2%
3903775 192.8.1.419 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PF27603 0.61 47.0 4.54e-01 81.9% 89.2%
3766956 622.4.1.22 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › FAM186A-B_N 0.61 46.0 4.38e-01 77.1% 74.2%
3526587 109.4.1.839 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.61 52.0 3.60e-01 93.3% 30.3%
3398733 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 3.72e-01 99.0% 39.2%
3978419 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.53 40.0 3.75e-01 79.0% 82.3%
3390900 174.1.1.29 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 0.51 43.0 3.82e-01 95.2% 88.1%
D2 medium residues 20-39_51-82
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qyxB01 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.62 55.0 4.32e-01 100.0% 60.6%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.61 51.0 4.63e-01 98.1% 81.1%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.55 46.0 4.54e-01 100.0% 89.7%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.54 44.0 3.91e-01 96.2% 72.0%
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.53 44.0 3.92e-01 100.0% 92.6%
6spbZ00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.53 42.0 4.12e-01 92.3% 100.0%
5aa2B02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 45.0 3.74e-01 100.0% 95.8%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.51 44.0 4.24e-01 100.0% 88.3%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.71e-01 98.1% 97.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5035014 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.69 62.0 5.57e-01 100.0% 82.9%
4932824 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.68 61.0 5.73e-01 100.0% 84.4%
3607639 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.66 58.0 3.44e-01 100.0% 13.5%
4021062 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.64 54.0 5.23e-01 96.2% 98.3%
5024944 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.57 43.0 4.49e-01 100.0% 100.0%
4414247 3922.1.1.245 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Ycf1 0.56 30.0 2.10e-01 100.0% 14.7%
3684485 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.56 47.0 3.98e-01 98.1% 66.7%
4074028 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.54 46.0 4.33e-01 100.0% 93.8%
1759006 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.54 44.0 4.33e-01 96.2% 100.0%
1890284 4076.3.1.5 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.54 45.0 4.39e-01 100.0% 89.7%
4597456 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.53 43.0 4.24e-01 98.1% 100.0%
4076796 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.53 43.0 4.09e-01 96.2% 90.8%
3080544 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.53 46.0 3.78e-01 100.0% 61.0%
4347806 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.52 44.0 4.30e-01 100.0% 100.0%