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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00153
Bact-VirALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00153
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-93
Domain cluster:
rep: MT811961.1__QNI21044.1__X__00098__D3-98
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20287.4 best | SH3DP | 55.8 | 5.00e-15 | 100.0% | 67.2% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 48.0 | 5.08e-01 | 100.0% | 70.1% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 44.0 | 5.23e-01 | 100.0% | 90.9% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 46.0 | 4.95e-01 | 100.0% | 74.6% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 45.0 | 4.85e-01 | 100.0% | 73.6% |
| 5kcoA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 41.0 | 4.78e-01 | 97.6% | 79.7% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 47.0 | 5.40e-01 | 100.0% | 91.9% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.71 | 46.0 | 5.25e-01 | 100.0% | 90.5% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.67 | 39.0 | 4.75e-01 | 90.6% | 94.2% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.66 | 36.0 | 4.19e-01 | 81.2% | 77.2% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.66 | 39.0 | 4.63e-01 | 91.8% | 89.3% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 42.0 | 4.73e-01 | 100.0% | 88.7% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.64 | 37.0 | 4.59e-01 | 91.8% | 96.1% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.62 | 40.0 | 4.50e-01 | 92.9% | 85.9% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.62 | 36.0 | 4.26e-01 | 92.9% | 87.5% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 37.0 | 4.41e-01 | 87.1% | 91.1% |
| 2b2cA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.61 | 38.0 | 4.36e-01 | 91.8% | 85.9% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 32.0 | 4.21e-01 | 97.6% | 91.8% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.58 | 36.0 | 4.20e-01 | 92.9% | 91.5% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 35.0 | 3.81e-01 | 97.6% | 78.9% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 41.0 | 3.00e-01 | 87.1% | 83.7% |
| 6jy5B00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.51 | 40.0 | 4.06e-01 | 83.5% | 93.9% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4505316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 49.0 | 5.74e-01 | 100.0% | 85.0% |
| 4241924 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.78 | 48.0 | 4.72e-01 | 100.0% | 57.8% |
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 47.0 | 5.33e-01 | 100.0% | 80.0% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 45.0 | 5.54e-01 | 97.6% | 90.9% |
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 46.0 | 5.52e-01 | 100.0% | 92.7% |
| 4629735 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 47.0 | 5.32e-01 | 100.0% | 81.5% |
| 3742938 | 4.1.1.102 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_3 | 0.76 | 46.0 | 5.22e-01 | 98.8% | 80.0% |
| 5034724 | 4.1.1.482 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4314 | 0.74 | 45.0 | 5.45e-01 | 92.9% | 94.5% |
| 3622389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 42.0 | 4.78e-01 | 100.0% | 73.8% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 51.0 | 4.64e-01 | 100.0% | 54.5% |
| 3929260 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 43.0 | 5.22e-01 | 98.8% | 90.9% |
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 45.0 | 5.35e-01 | 100.0% | 94.5% |
| 3927411 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.73 | 40.0 | 5.15e-01 | 80.0% | 100.0% |
| 3591224 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 42.0 | 5.25e-01 | 98.8% | 98.0% |
| 3591209 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 41.0 | 4.85e-01 | 89.4% | 80.0% |
| 4284709 | 4.1.1.111 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_RapA | 0.72 | 43.0 | 5.22e-01 | 100.0% | 92.7% |
| 3597255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 45.0 | 4.54e-01 | 100.0% | 63.5% |
| 5055172 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.70 | 41.0 | 4.97e-01 | 92.9% | 90.9% |
| 5052257 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 43.0 | 4.95e-01 | 100.0% | 90.0% |
| 3991073 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 37.0 | 4.49e-01 | 83.5% | 83.6% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.64 | 44.0 | 4.67e-01 | 100.0% | 80.0% |
| 3586562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 43.0 | 4.38e-01 | 100.0% | 69.4% |
| 4031199 | 4.1.1.86 ↗ | beta barrels › SH3 › SH3 › SH3 › GW | 0.62 | 47.0 | 4.82e-01 | 98.8% | 83.7% |
| 3942573 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 40.0 | 4.60e-01 | 100.0% | 96.6% |
| 3910933 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.62 | 36.0 | 4.15e-01 | 91.8% | 81.7% |
| 3701345 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 4.97e-01 | 98.8% | 88.7% |
| 4376886 | 4.1.1.241 ↗ | beta barrels › SH3 › SH3 › SH3 › NifZ | 0.60 | 47.0 | 4.91e-01 | 100.0% | 88.7% |
| 3394354 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.57 | 44.0 | 4.20e-01 | 82.4% | 97.0% |
| 3411042 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 37.0 | 4.39e-01 | 97.6% | 95.0% |
| 3679362 | 4.1.1.351 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 | 0.56 | 49.0 | 4.96e-01 | 100.0% | 96.5% |
| 4190716 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.54 | 35.0 | 3.16e-01 | 95.3% | 48.7% |
| 4578663 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 36.0 | 3.94e-01 | 94.1% | 84.3% |
| 3378009 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.53 | 44.0 | 3.77e-01 | 100.0% | 57.0% |
| 3374503 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.52 | 43.0 | 3.62e-01 | 100.0% | 54.3% |
| 3510302 | 243.3.1.53 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN | 0.51 | 42.0 | 4.09e-01 | 92.9% | 93.9% |
| 3632043 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.51 | 35.0 | 3.33e-01 | 71.8% | 91.4% |
| 4937014 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 38.0 | 2.56e-01 | 82.4% | 91.3% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.51 | 34.0 | 3.74e-01 | 92.9% | 84.3% |
| 3349450 | 220.1.1.19 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle | 0.50 | 37.0 | 3.39e-01 | 97.6% | 56.7% |