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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00158

Bact-Vir

ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00158

Identity

Kingdom:
phage

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-76
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.66 38.0 3.21e-01 100.0% 33.6%
1s7mA03 2.20.25.140 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 29.0 3.80e-01 73.5% 100.0%
5cqgA02 3.10.10.20 Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › 0.61 42.0 4.22e-01 82.4% 70.8%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 34.0 3.13e-01 100.0% 46.2%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 45.0 2.97e-01 94.1% 83.6%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.53 38.0 3.55e-01 77.9% 100.0%
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.53 38.0 2.73e-01 86.8% 24.1%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.06e-01 98.5% 75.0%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 31.0 2.84e-01 72.1% 42.1%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.59e-01 76.5% 72.7%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.51 36.0 2.80e-01 77.9% 31.7%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 39.0 2.58e-01 94.1% 78.0%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.27e-01 97.1% 96.2%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 34.0 2.69e-01 89.7% 33.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000498 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.71 40.0 4.29e-01 100.0% 63.3%
3969312 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.67 40.0 3.95e-01 100.0% 57.1%
2516752 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.62 36.0 3.91e-01 100.0% 67.2%
4004088 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.60 32.0 3.96e-01 76.5% 87.5%
5079277 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 37.0 3.91e-01 89.7% 81.0%
5032072 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 32.0 3.52e-01 76.5% 70.9%
4936825 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 32.0 3.60e-01 75.0% 76.0%
3281159 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.55 39.0 3.03e-01 76.5% 81.8%
5032296 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 32.0 3.50e-01 76.5% 70.9%
5065651 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 32.0 3.50e-01 76.5% 70.9%
4992409 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 30.0 3.54e-01 76.5% 84.4%
3799822 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 28.0 3.42e-01 73.5% 85.0%
4004145 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 40.0 2.96e-01 88.2% 31.2%
4933873 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 32.0 3.45e-01 77.9% 72.7%
3880625 389.1.1.103 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF30000 0.52 29.0 3.42e-01 83.8% 75.6%
312608 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.52 44.0 3.06e-01 98.5% 75.0%
3484326 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 42.0 2.79e-01 91.2% 40.7%
5070516 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.52 32.0 3.44e-01 82.4% 71.7%
376220 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 42.0 2.81e-01 94.1% 83.6%
5022607 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 36.0 2.42e-01 73.5% 42.0%
5040491 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 33.0 3.31e-01 83.8% 64.3%
5059683 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 30.0 3.32e-01 76.5% 78.0%
4973203 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.50 30.0 3.29e-01 76.5% 76.0%