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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00186
Bact-VirALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00186
Identity
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 375-488
Domain cluster:
rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00320__D697-821
D2
medium
residues 1-43_162-194_249-324
Domain cluster:
rep: MK308677.1__QAX97080.1__X__00136__D13-29_161-190_242-310
D3
medium
residues 44-152
Domain cluster:
rep: OM728297.1__WCS68316.1__Goe21_02060__00206__D532-682
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d5pA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.79 | 70.0 | 6.50e-01 | 95.4% | 91.7% |
| 2icgA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.75 | 68.0 | 6.00e-01 | 100.0% | 88.7% |
| 2pagA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.71 | 64.0 | 6.05e-01 | 100.0% | 91.7% |
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.55 | 30.0 | 3.82e-01 | 83.5% | 96.7% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.55 | 43.0 | 3.86e-01 | 86.2% | 91.8% |
| 3odtA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 3.33e-01 | 100.0% | 73.0% |
| 4u1eI00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 3.20e-01 | 100.0% | 82.1% |
| 7apkF01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 44.0 | 3.20e-01 | 100.0% | 94.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6665 | 4205.1.1.4 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SUKH_5 | 0.71 | 64.0 | 6.05e-01 | 100.0% | 91.7% |
| 3964076 | 4205.1.1.3 ↗ | a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › SMI1_KNR4 | 0.67 | 54.0 | 5.38e-01 | 87.2% | 97.4% |
| 4946049 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.58 | 37.0 | 4.24e-01 | 90.8% | 90.0% |
| 3655793 | 5.1.4.367 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, WD40_WDHD1_1st | 0.56 | 50.0 | 3.62e-01 | 100.0% | 85.2% |
| 3272708 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.56 | 34.0 | 3.79e-01 | 99.1% | 80.0% |
| 3619159 | 292.2.1.5 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 | 0.55 | 33.0 | 3.52e-01 | 85.3% | 67.4% |
| 999859 | 79.1.1.12 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp138_C | 0.54 | 30.0 | 3.09e-01 | 83.5% | 54.2% |
| 4947558 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 32.0 | 3.50e-01 | 77.1% | 70.0% |
| 5073587 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.53 | 33.0 | 3.53e-01 | 77.1% | 70.5% |
| 3273142 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.53 | 34.0 | 2.47e-01 | 88.1% | 22.6% |
| 4981525 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.53 | 33.0 | 3.72e-01 | 77.1% | 84.8% |
| 4929392 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.53 | 31.0 | 3.39e-01 | 77.1% | 70.0% |
| 4025576 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 45.0 | 3.52e-01 | 95.4% | 89.0% |
| 5074928 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 31.0 | 3.70e-01 | 77.1% | 95.4% |
| 3628862 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 42.0 | 3.35e-01 | 89.0% | 90.2% |
| None | — | 0.51 | 44.0 | 3.19e-01 | 100.0% | 87.6% | |
| 1406536 | 5.1.4.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 | 0.51 | 44.0 | 3.26e-01 | 100.0% | 87.7% |
| 3657192 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 44.0 | 2.95e-01 | 97.2% | 66.5% |
| 3480636 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 40.0 | 2.66e-01 | 88.1% | 50.3% |
D4
medium
residues 325-374
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vkgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.71 | 60.0 | 4.26e-01 | 98.0% | 34.4% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 52.0 | 4.80e-01 | 98.0% | 73.8% |