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ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00196

Bact-Vir

ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00196

Identity

Kingdom:
phage

Quality

91.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.86 64.0 6.51e-01 78.0% 93.8%
4djgB00 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.82 60.0 6.18e-01 78.0% 95.7%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.80 59.0 6.26e-01 78.0% 100.0%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.76 55.0 4.20e-01 76.0% 50.5%
3q1pA01 6.10.250.1120 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 51.0 5.45e-01 70.0% 100.0%
3l39A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.74 64.0 4.26e-01 98.0% 39.0%
4bx8A03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.72 55.0 4.30e-01 84.0% 43.5%
4crwA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.71 63.0 4.06e-01 100.0% 42.9%
4uzzB00 6.10.250.2800 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 48.0 4.46e-01 74.0% 56.9%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.68 49.0 3.70e-01 78.0% 44.4%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.68 51.0 4.43e-01 84.0% 57.3%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 57.0 4.84e-01 100.0% 57.6%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.66 45.0 4.40e-01 76.0% 64.3%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 53.0 4.36e-01 100.0% 89.8%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 55.0 5.15e-01 96.0% 82.3%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 44.0 2.64e-01 72.0% 9.8%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 51.0 4.86e-01 88.0% 75.0%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.64 48.0 4.84e-01 88.0% 96.1%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.64 46.0 4.73e-01 84.0% 100.0%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 44.0 4.48e-01 78.0% 84.3%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.63 43.0 3.49e-01 74.0% 35.8%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.62 46.0 3.46e-01 88.0% 30.4%
1zkdA03 6.10.250.3300 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 43.0 4.51e-01 82.0% 86.0%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 45.0 4.42e-01 88.0% 98.3%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.60 42.0 4.25e-01 78.0% 87.2%
5mmjn01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 49.0 4.03e-01 90.0% 94.4%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.59 48.0 4.20e-01 100.0% 64.4%
4jvtA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.58 41.0 4.38e-01 80.0% 95.1%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.55 41.0 2.83e-01 80.0% 22.2%
4l9aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 2.90e-01 100.0% 70.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3423915 6132.1.1.10 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › R3H-assoc 0.91 66.0 6.37e-01 76.0% 78.2%
5004859 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.80 63.0 6.35e-01 86.0% 100.0%
148414 605.4.1.2 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC 0.77 60.0 6.06e-01 84.0% 91.8%
3472935 614.1.1.1 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.77 59.0 5.75e-01 82.0% 74.5%
3299128 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 48.0 3.78e-01 76.0% 35.0%
3738358 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 56.0 4.95e-01 90.0% 68.0%
2095477 1170.1.2.2 beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.69 57.0 4.16e-01 92.0% 44.6%
2524661 3932.1.1.2 alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › Cas_Csm6_6H 0.67 45.0 4.20e-01 70.0% 55.4%
3863804 5.1.4.17 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A,MMS1_N 0.67 47.0 2.62e-01 76.0% 4.8%
3973171 607.1.1.1 alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N 0.67 49.0 3.73e-01 82.0% 36.0%
4322913 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.64 47.0 5.10e-01 78.0% 100.0%
4027274 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.62 48.0 3.71e-01 98.0% 73.8%
4983624 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 51.0 3.12e-01 100.0% 32.8%
4127368 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.60 46.0 4.62e-01 90.0% 90.0%
3959151 377.2.1.1 few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › zf-FPG_IleRS 0.57 43.0 3.97e-01 84.0% 89.7%
1487328 3928.1.1.1 alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA › CrgA 0.57 43.0 4.36e-01 90.0% 98.0%
D2 medium residues 51-170
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bf5A01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.64 52.0 4.64e-01 87.5% 95.2%
1wjtA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.60 39.0 4.17e-01 84.2% 76.7%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 41.0 4.44e-01 73.3% 100.0%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 4.51e-01 77.5% 95.2%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.55 40.0 4.40e-01 75.8% 97.9%
3pnxA00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.54 42.0 3.83e-01 82.5% 78.8%
5mi7A03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.53 42.0 3.27e-01 83.3% 62.5%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 32.0 3.84e-01 83.3% 95.9%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 40.0 4.22e-01 85.0% 88.1%
2xkrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 41.0 2.91e-01 84.2% 85.1%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 46.0 4.03e-01 98.3% 87.4%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.52 35.0 3.98e-01 72.5% 94.3%
3llwD00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 40.0 3.00e-01 82.5% 39.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3549793 109.4.1.213 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FancD2 0.65 56.0 4.75e-01 92.5% 69.2%
3898384 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 48.0 4.75e-01 77.5% 71.5%
3506507 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 45.0 4.35e-01 89.2% 65.2%
3248033 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 55.0 4.39e-01 96.7% 62.5%
3214165 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 49.0 4.78e-01 80.8% 91.5%
3917600 604.1.1.6 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_4 0.63 48.0 4.81e-01 79.2% 88.3%
4014050 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.62 54.0 4.35e-01 94.2% 81.7%
3226815 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.61 52.0 4.91e-01 92.5% 95.9%
3685111 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 52.0 3.48e-01 91.7% 49.8%
4161991 604.12.1.4 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 0.60 46.0 4.22e-01 80.0% 81.3%
3200560 109.4.1.298 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel 0.60 52.0 3.87e-01 95.8% 51.1%
3598481 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.60 46.0 4.55e-01 81.7% 98.5%
3795231 109.4.1.330 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BIG2_C 0.59 50.0 3.82e-01 91.7% 56.8%
3682591 109.4.1.1472 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2, Thoc2, THOC2_N 0.58 49.0 2.93e-01 91.7% 13.7%
3282593 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.58 48.0 3.86e-01 90.0% 76.7%
5072346 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.58 48.0 4.07e-01 90.0% 70.0%
3625860 601.20.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipophorin-III › Apolipophorin-III 0.58 49.0 4.25e-01 92.5% 61.1%
3577228 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 43.0 4.41e-01 79.2% 91.3%
4964055 5069.1.1.6 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › COX15-CtaA 0.57 42.0 3.99e-01 75.8% 78.6%
3330505 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.57 43.0 4.69e-01 80.8% 99.0%
3892492 604.1.1.66 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL 0.57 43.0 4.51e-01 80.0% 90.9%
3810590 109.4.1.623 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 0.57 49.0 2.87e-01 93.3% 12.3%
1870497 3271.1.1.1 alpha arrays › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › Ntox28 0.56 41.0 4.50e-01 75.8% 91.1%
4059289 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.55 39.0 3.12e-01 72.5% 95.0%
4934240 150.1.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.55 44.0 4.17e-01 97.5% 69.8%
5074225 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.55 39.0 4.37e-01 74.2% 97.8%
3177832 174.1.1.62 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27705 0.55 50.0 4.54e-01 100.0% 80.0%
3660 633.10.1.1 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP 0.54 45.0 4.67e-01 90.0% 96.5%
3724505 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.95e-01 90.0% 62.8%
4016304 5000.4.1.0 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.54 45.0 3.61e-01 90.8% 56.4%
3397195 603.1.1.134 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Wbp11 0.54 40.0 3.91e-01 82.5% 71.1%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.53 39.0 3.91e-01 75.0% 100.0%
4029243 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 3.31e-01 76.7% 57.9%
4622045 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.52 39.0 3.11e-01 79.2% 90.8%
4022885 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.24e-01 89.2% 50.0%
3993870 109.40.1.0 alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain 0.52 39.0 4.00e-01 83.3% 80.8%
5000819 150.1.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.50 44.0 3.88e-01 97.5% 65.1%
4963655 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.50 43.0 3.97e-01 93.3% 74.8%