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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00004
Bact-VirALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00004
Identity
- Kingdom:
- phage
Quality
75.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-72
Domain cluster:
rep: OP620778.1__WGN97550.1__X__00136__D6-71
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 37.0 | 3.65e-01 | 72.9% | 62.2% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.57 | 44.0 | 3.41e-01 | 85.7% | 94.0% |
| 3dfjA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 37.0 | 3.20e-01 | 71.4% | 85.0% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 37.0 | 3.13e-01 | 72.9% | 43.5% |
| 7x4lC02 | 3.90.1150.160 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.53 | 37.0 | 3.07e-01 | 74.3% | 81.2% |
| 5cadA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 31.0 | 2.32e-01 | 74.3% | 21.2% |
| 5o9iA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 41.0 | 3.19e-01 | 90.0% | 95.3% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.51 | 37.0 | 3.21e-01 | 92.9% | 46.7% |
| 5fcrC02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 35.0 | 3.10e-01 | 72.9% | 91.6% |
| 3mpxA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 34.0 | 3.05e-01 | 70.0% | 80.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4421311 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.70 | 54.0 | 4.64e-01 | 88.6% | 52.7% |
| 3385437 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.68 | 50.0 | 4.43e-01 | 88.6% | 54.0% |
| 3964437 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.67 | 51.0 | 4.38e-01 | 88.6% | 51.8% |
| 3585142 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.67 | 58.0 | 4.91e-01 | 100.0% | 95.0% |
| 3838774 | 3430.1.1.1 ↗ | a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD | 0.66 | 47.0 | 4.16e-01 | 85.7% | 50.5% |
| 4956150 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 44.0 | 4.84e-01 | 78.6% | 92.7% |
| 5030213 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.64 | 49.0 | 3.81e-01 | 82.9% | 82.7% |
| 4032084 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.63 | 34.0 | 3.12e-01 | 100.0% | 38.9% |
| 3504502 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.63 | 53.0 | 4.58e-01 | 94.3% | 96.5% |
| 5052959 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 43.0 | 4.72e-01 | 78.6% | 92.7% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.61 | 41.0 | 4.68e-01 | 78.6% | 98.0% |
| 3917729 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.61 | 43.0 | 4.06e-01 | 74.3% | 64.7% |
| 4086239 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 43.0 | 4.69e-01 | 74.3% | 94.5% |
| 5012957 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.60 | 47.0 | 3.53e-01 | 85.7% | 89.7% |
| 3630527 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 47.0 | 4.90e-01 | 91.4% | 93.8% |
| 4120420 | 295.1.1.15 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 | 0.59 | 49.0 | 4.13e-01 | 91.4% | 57.4% |
| 3624434 | 821.1.1.8 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd | 0.58 | 47.0 | 3.50e-01 | 90.0% | 35.7% |
| 3968768 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 40.0 | 3.94e-01 | 71.4% | 98.7% |
| 3594510 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.57 | 39.0 | 2.81e-01 | 71.4% | 75.2% |
| 4963432 | 4076.2.1.7 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF5817 | 0.57 | 47.0 | 4.50e-01 | 100.0% | 77.6% |
| 3672526 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 38.0 | 3.23e-01 | 74.3% | 61.6% |
| 3504586 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.54 | 47.0 | 3.73e-01 | 100.0% | 63.9% |
| 5034902 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.54 | 40.0 | 3.23e-01 | 80.0% | 58.6% |
| 3995153 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 37.0 | 3.24e-01 | 71.4% | 77.1% |
| 4027577 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 37.0 | 3.07e-01 | 71.4% | 77.6% |
| 3542185 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.52 | 38.0 | 2.51e-01 | 78.6% | 20.1% |
| 3786556 | 10.12.1.12 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD | 0.52 | 41.0 | 2.81e-01 | 91.4% | 95.6% |
| 4241460 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.52 | 43.0 | 3.63e-01 | 100.0% | 65.2% |
| 3555467 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.51 | 36.0 | 3.16e-01 | 75.7% | 64.3% |
| 3387895 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 43.0 | 3.43e-01 | 100.0% | 84.4% |
| 3869235 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.50 | 38.0 | 2.49e-01 | 82.9% | 20.6% |