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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00024
Bact-VirALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00024
Identity
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-53
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sqhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.75 | 65.0 | 4.56e-01 | 98.1% | 68.7% |
| 2prrA01 | 1.20.5.810 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › AhpD-like | 0.64 | 45.0 | 4.49e-01 | 88.5% | 73.6% |
| 4uhwA09 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.62 | 53.0 | 4.36e-01 | 98.1% | 89.6% |
| 4ciuA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 45.0 | 3.10e-01 | 80.8% | 21.9% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.60 | 40.0 | 4.56e-01 | 80.8% | 100.0% |
| 7c1hB01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.60 | 46.0 | 3.25e-01 | 84.6% | 67.4% |
| 3k7dA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 49.0 | 3.73e-01 | 96.2% | 70.9% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.59 | 39.0 | 3.83e-01 | 71.2% | 61.8% |
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.59 | 49.0 | 3.64e-01 | 92.3% | 51.9% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 48.0 | 3.98e-01 | 90.4% | 59.3% |
| 1n00A01 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.58 | 40.0 | 3.51e-01 | 84.6% | 45.2% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.58 | 48.0 | 3.87e-01 | 94.2% | 91.4% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 43.0 | 3.88e-01 | 82.7% | 60.8% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 45.0 | 3.85e-01 | 88.5% | 60.2% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.56 | 46.0 | 4.09e-01 | 96.2% | 67.9% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.56 | 39.0 | 3.79e-01 | 84.6% | 65.0% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.55 | 44.0 | 3.99e-01 | 88.5% | 93.2% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.55 | 41.0 | 3.55e-01 | 88.5% | 53.7% |
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.54 | 42.0 | 3.50e-01 | 94.2% | 90.5% |
| 4logB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 45.0 | 2.97e-01 | 100.0% | 73.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4044098 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.81 | 70.0 | 4.03e-01 | 94.2% | 62.2% |
| 3238365 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.80 | 56.0 | 3.15e-01 | 76.9% | 6.8% |
| 5075035 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.79 | 56.0 | 3.45e-01 | 75.0% | 14.2% |
| 3798353 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.77 | 55.0 | 3.89e-01 | 75.0% | 26.0% |
| 1107976 | 213.1.1.42 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF5645 | 0.75 | 65.0 | 4.67e-01 | 98.1% | 75.5% |
| 3240695 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.73 | 56.0 | 3.86e-01 | 84.6% | 93.9% |
| 4550256 | 604.12.1.76 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA | 0.71 | 54.0 | 4.83e-01 | 82.7% | 76.0% |
| 5059276 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.70 | 54.0 | 4.12e-01 | 84.6% | 39.2% |
| 4088719 | 3579.1.1.13 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › PhaG_MnhG_YufB | 0.64 | 47.0 | 3.66e-01 | 82.7% | 36.3% |
| 4040950 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.63 | 47.0 | 3.70e-01 | 80.8% | 36.3% |
| 3964561 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 4.15e-01 | 80.8% | 58.6% |
| 5002913 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.60 | 48.0 | 3.40e-01 | 88.5% | 46.5% |
| 5043369 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.59 | 48.0 | 3.16e-01 | 98.1% | 19.8% |
| 3510838 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 50.0 | 4.91e-01 | 98.1% | 89.1% |
| 3503611 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 52.0 | 4.31e-01 | 100.0% | 55.8% |
| 3590851 | 181.2.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C | 0.58 | 49.0 | 4.30e-01 | 96.2% | 67.5% |
| 4114241 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.57 | 48.0 | 3.91e-01 | 94.2% | 66.0% |
| 4652008 | 181.2.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C | 0.57 | 48.0 | 4.27e-01 | 96.2% | 70.5% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.57 | 48.0 | 4.60e-01 | 92.3% | 91.5% |
| 5033945 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.56 | 45.0 | 4.11e-01 | 100.0% | 65.7% |
| 3504009 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 46.0 | 4.08e-01 | 100.0% | 61.2% |
| 3813420 | 3345.1.1.1 ↗ | alpha arrays › MRG domain › MRG domain › MRG domain › MRG | 0.54 | 45.0 | 3.25e-01 | 94.2% | 52.9% |
| 4954713 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.52 | 39.0 | 3.29e-01 | 96.2% | 86.7% |