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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00110
Bact-VirALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00110
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-78
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 34.0 | 4.13e-01 | 93.6% | 72.0% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 34.0 | 4.54e-01 | 93.6% | 92.3% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 34.0 | 4.15e-01 | 94.9% | 74.0% |
| 3cdlA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 37.0 | 4.31e-01 | 97.4% | 79.6% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 33.0 | 3.65e-01 | 89.7% | 58.7% |
| 1j5yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 36.0 | 3.90e-01 | 93.6% | 64.1% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 34.0 | 3.28e-01 | 70.5% | 44.8% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 32.0 | 4.11e-01 | 93.6% | 92.7% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 32.0 | 4.06e-01 | 100.0% | 88.6% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 32.0 | 3.72e-01 | 93.6% | 70.9% |
| 2id3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 36.0 | 4.28e-01 | 100.0% | 93.9% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 33.0 | 3.34e-01 | 71.8% | 52.5% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 40.0 | 3.81e-01 | 100.0% | 59.6% |
| 2ee7A01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.54 | 43.0 | 3.85e-01 | 89.7% | 71.3% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 35.0 | 4.16e-01 | 98.7% | 98.1% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.53 | 34.0 | 2.84e-01 | 73.1% | 38.9% |
| 1hw1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 32.0 | 3.26e-01 | 97.4% | 61.3% |
| 4a15A03 | 1.10.275.40 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.52 | 36.0 | 3.09e-01 | 74.4% | 55.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4486944 | 7565.1.1.0 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like | 0.67 | 32.0 | 2.42e-01 | 93.6% | 19.4% |
| 5076741 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.67 | 33.0 | 4.05e-01 | 94.9% | 74.0% |
| 3989075 | 101.1.3.11 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 | 0.66 | 32.0 | 4.43e-01 | 97.4% | 97.4% |
| 3873677 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.65 | 35.0 | 3.69e-01 | 100.0% | 58.6% |
| 4334657 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.64 | 33.0 | 4.20e-01 | 100.0% | 86.7% |
| 4198219 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 33.0 | 4.18e-01 | 100.0% | 86.7% |
| 5003647 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.62 | 34.0 | 3.84e-01 | 98.7% | 70.7% |
| 3713398 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.60 | 46.0 | 3.76e-01 | 85.9% | 94.4% |
| 4944438 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.58 | 31.0 | 2.96e-01 | 97.4% | 43.2% |
| 3998879 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 37.0 | 3.18e-01 | 70.5% | 55.0% |
| 4430740 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 46.0 | 2.87e-01 | 100.0% | 38.4% |
| 3656429 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.53 | 47.0 | 3.48e-01 | 100.0% | 44.4% |
| 3303282 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.53 | 44.0 | 4.16e-01 | 94.9% | 85.7% |
| 3452698 | 101.1.10.37 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF26138 | 0.53 | 44.0 | 4.19e-01 | 94.9% | 87.4% |
| 1159960 | 101.1.1.95 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like | 0.52 | 36.0 | 3.78e-01 | 98.7% | 79.7% |
| 3311588 | 101.1.1.10 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › ARID | 0.51 | 36.0 | 3.13e-01 | 74.4% | 53.1% |
| 3882839 | 101.1.1.129 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 | 0.51 | 42.0 | 3.65e-01 | 91.0% | 68.3% |
D2
medium
residues 79-133
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ff4Y00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.59 | 42.0 | 3.64e-01 | 78.2% | 86.3% |
| 2fh0A00 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.59 | 42.0 | 3.74e-01 | 76.4% | 61.7% |
| 3td9A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 44.0 | 3.01e-01 | 83.6% | 41.7% |
| 3shgA00 | 1.10.3290.10 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain | 0.56 | 43.0 | 3.03e-01 | 89.1% | 26.3% |
| 3htaC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 36.0 | 2.59e-01 | 70.9% | 50.8% |
| 2cjaA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 38.0 | 2.54e-01 | 92.7% | 50.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020861 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 3.44e-01 | 83.6% | 78.0% |
| 4948659 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.54 | 43.0 | 2.99e-01 | 89.1% | 53.2% |
| 3404878 | 212.1.1.6 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9 | 0.53 | 37.0 | 2.44e-01 | 81.8% | 29.2% |
| 3962369 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.52 | 38.0 | 2.74e-01 | 83.6% | 25.6% |
| 4581259 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.52 | 40.0 | 3.91e-01 | 87.3% | 81.7% |
| 1686475 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.51 | 40.0 | 3.38e-01 | 94.5% | 91.6% |