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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00123

Bact-Vir

ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00123

Identity

Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-67
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d5lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.82e-01 89.3% 100.0%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 44.0 4.63e-01 96.4% 89.6%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.61 46.0 3.65e-01 83.9% 42.3%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.60 41.0 3.97e-01 75.0% 64.1%
4ezbA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 44.0 3.62e-01 85.7% 91.5%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.59 49.0 4.63e-01 96.4% 82.4%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.57 49.0 4.20e-01 100.0% 59.6%
3bciA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 3.43e-01 98.2% 41.2%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.55 44.0 3.53e-01 100.0% 50.7%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 2.92e-01 85.7% 52.7%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 44.0 3.46e-01 100.0% 98.5%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 37.0 3.76e-01 82.1% 89.5%
3ltjA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.50 36.0 2.62e-01 78.6% 39.8%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 38.0 3.04e-01 83.9% 80.8%
3c2bA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 38.0 2.96e-01 89.3% 55.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068868 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.84 57.0 6.53e-01 71.4% 100.0%
5028731 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.83 61.0 5.97e-01 85.7% 73.3%
5030241 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 61.0 6.00e-01 91.1% 80.0%
5042980 101.35.1.41 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26555 0.76 60.0 6.28e-01 91.1% 96.0%
4392311 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.76 57.0 6.15e-01 89.3% 100.0%
4995679 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 59.0 6.18e-01 87.5% 98.0%
4472631 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.72 52.0 5.69e-01 85.7% 97.8%
4937490 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.68 46.0 5.07e-01 73.2% 100.0%
3936170 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.67 56.0 4.21e-01 96.4% 64.1%
4053440 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.65 55.0 5.10e-01 100.0% 90.7%
3617454 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.65 49.0 5.07e-01 96.4% 94.0%
4530493 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.65 50.0 4.75e-01 87.5% 78.6%
3983493 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.62 47.0 4.87e-01 94.6% 94.0%
2556 101.1.1.43 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.61 44.0 4.63e-01 96.4% 89.6%
3706397 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.58e-01 96.4% 75.4%
4510293 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.61 41.0 3.67e-01 100.0% 47.1%
3590551 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.59 43.0 4.50e-01 92.9% 92.0%
4946761 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.58 43.0 4.09e-01 91.1% 65.7%
None — 0.55 45.0 3.13e-01 100.0% 28.0%
3278834 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.53 40.0 3.86e-01 89.3% 95.7%
3862883 109.3.1.92 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › ZSWIM4-8_C 0.52 35.0 2.58e-01 73.2% 21.6%
3805407 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 40.0 2.92e-01 91.1% 27.6%