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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00129
Bact-VirALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00129
Identity
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-90
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.66 | 38.0 | 4.69e-01 | 81.8% | 94.4% |
| 3tu3B01 | 3.30.720.80 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.63 | 39.0 | 4.25e-01 | 100.0% | 73.7% |
| 7c38B01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.62 | 45.0 | 3.10e-01 | 76.1% | 27.2% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 39.0 | 3.37e-01 | 84.1% | 41.5% |
| 1asuA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 45.0 | 3.71e-01 | 77.3% | 92.0% |
| 3mbhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 47.0 | 3.25e-01 | 81.8% | 62.3% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 37.0 | 3.68e-01 | 81.8% | 57.9% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.61 | 48.0 | 4.36e-01 | 85.2% | 98.3% |
| 1vw5A00 | 3.30.70.1420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 | 0.60 | 41.0 | 3.45e-01 | 70.5% | 98.0% |
| 7knlA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.60 | 43.0 | 3.97e-01 | 75.0% | 81.6% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 39.0 | 4.53e-01 | 92.0% | 90.9% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 46.0 | 3.09e-01 | 86.4% | 39.4% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.59 | 40.0 | 3.80e-01 | 88.6% | 57.4% |
| 3d5pA00 | 3.40.1580.10 | Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like | 0.58 | 38.0 | 3.34e-01 | 87.5% | 44.4% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 44.0 | 4.54e-01 | 100.0% | 87.8% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 33.0 | 3.99e-01 | 100.0% | 96.2% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 38.0 | 2.69e-01 | 73.9% | 42.4% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.54 | 32.0 | 2.73e-01 | 70.5% | 37.2% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 40.0 | 3.42e-01 | 84.1% | 97.5% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 42.0 | 3.44e-01 | 100.0% | 46.0% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 34.0 | 3.82e-01 | 70.5% | 86.6% |
| 2w20B01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 44.0 | 2.96e-01 | 96.6% | 86.1% |
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.53 | 37.0 | 2.44e-01 | 75.0% | 91.2% |
| 1celA00 | 2.70.100.10 | Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain | 0.52 | 46.0 | 2.93e-01 | 96.6% | 71.1% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.52 | 37.0 | 3.16e-01 | 75.0% | 73.5% |
| 4pqdA00 | 3.90.570.10 | Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain | 0.52 | 41.0 | 3.96e-01 | 88.6% | 90.5% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.52 | 29.0 | 3.55e-01 | 100.0% | 92.3% |
| 1jlxA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 45.0 | 3.91e-01 | 100.0% | 100.0% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079725 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 42.0 | 4.98e-01 | 70.5% | 85.0% |
| 5040837 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.71 | 38.0 | 4.10e-01 | 79.5% | 61.3% |
| 3925738 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 42.0 | 3.91e-01 | 71.6% | 53.6% |
| 5004274 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.64 | 39.0 | 4.21e-01 | 90.9% | 72.0% |
| 3916526 | 719.1.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 | 0.63 | 49.0 | 4.29e-01 | 83.0% | 96.2% |
| 3832937 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.62 | 45.0 | 3.02e-01 | 76.1% | 21.2% |
| 3907175 | 719.1.1.3 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PAXX | 0.61 | 46.0 | 4.48e-01 | 80.7% | 100.0% |
| 3619264 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.61 | 41.0 | 4.16e-01 | 71.6% | 68.9% |
| 3209694 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 40.0 | 3.88e-01 | 71.6% | 60.0% |
| 1396826 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.59 | 39.0 | 4.50e-01 | 92.0% | 89.6% |
| 3319893 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 41.0 | 4.00e-01 | 72.7% | 65.0% |
| 3254492 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.59 | 52.0 | 4.49e-01 | 97.7% | 82.6% |
| 4566387 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.58 | 37.0 | 4.04e-01 | 95.5% | 78.6% |
| 4950506 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 36.0 | 3.46e-01 | 84.1% | 53.3% |
| 3591111 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 48.0 | 3.07e-01 | 94.3% | 89.9% |
| 3678841 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 38.0 | 3.89e-01 | 71.6% | 71.8% |
| 3461521 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 37.0 | 3.44e-01 | 96.6% | 52.2% |
| 3219930 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.56 | 39.0 | 3.48e-01 | 71.6% | 61.6% |
| 4120754 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.55 | 40.0 | 2.96e-01 | 76.1% | 33.3% |
| 4562142 | 136.1.1.1 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase | 0.55 | 39.0 | 2.64e-01 | 75.0% | 33.7% |
| 4012540 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 38.0 | 4.04e-01 | 71.6% | 82.7% |
| 4944932 | 2484.4.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like | 0.55 | 42.0 | 3.96e-01 | 83.0% | 100.0% |
| 5033075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 31.0 | 3.63e-01 | 98.9% | 85.5% |
| 3258354 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.54 | 41.0 | 2.79e-01 | 81.8% | 80.0% |
| 3378005 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.54 | 49.0 | 3.36e-01 | 100.0% | 83.4% |
| 4029635 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.53 | 38.0 | 3.33e-01 | 75.0% | 79.0% |
| 5056350 | 5.1.4.668 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CGLA | 0.53 | 45.0 | 2.95e-01 | 93.2% | 87.7% |
| 1422950 | 324.1.2.0 ↗ | a+b two layers › OsmC-like › OsmC-like | 0.53 | 42.0 | 3.49e-01 | 85.2% | 98.0% |
| 4928233 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 42.0 | 3.58e-01 | 86.4% | 85.7% |
| 3275404 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 32.0 | 3.64e-01 | 100.0% | 88.3% |
| 2643433 | 5.1.3.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin | 0.52 | 45.0 | 3.05e-01 | 97.7% | 81.5% |
| 3612284 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.52 | 37.0 | 3.28e-01 | 76.1% | 86.7% |
| 4961065 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.52 | 34.0 | 4.06e-01 | 78.4% | 100.0% |
| 3649700 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 38.0 | 3.94e-01 | 77.3% | 96.5% |
| 3579710 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.51 | 37.0 | 3.55e-01 | 77.3% | 85.7% |
| 3261235 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.51 | 34.0 | 3.49e-01 | 98.9% | 70.6% |
| 3600026 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 44.0 | 2.97e-01 | 95.5% | 84.7% |
| 5049994 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.51 | 38.0 | 4.09e-01 | 83.0% | 90.7% |
| 3212280 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 46.0 | 2.97e-01 | 100.0% | 83.2% |
| 2097 | 6.1.1.12 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Agglutinin | 0.51 | 45.0 | 3.86e-01 | 100.0% | 95.9% |
| 3719623 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 36.0 | 3.22e-01 | 78.4% | 76.4% |