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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00246

Bact-Vir

ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00246

Identity

Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-95_277-305
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11246.15 best Phage_gp53 31.6 1.90e-07 64.3% 24.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.57 35.0 3.51e-01 96.9% 59.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004560 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 48.0 6.43e-01 77.6% 98.2%
1832368 101.15.1.4 alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.87 81.0 6.32e-01 100.0% 81.3%
3331840 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 46.0 6.04e-01 77.6% 96.4%
4177991 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 47.0 6.14e-01 77.6% 100.0%
3979943 101.15.1.3 alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X 0.83 42.0 5.97e-01 70.4% 100.0%
4995817 101.15.1.4 alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.83 57.0 6.72e-01 91.8% 100.0%
3846469 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 45.0 4.72e-01 78.6% 61.1%
3517460 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 44.0 5.76e-01 79.6% 98.2%
3337080 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.79 45.0 5.64e-01 76.5% 93.3%
3691772 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 43.0 5.57e-01 78.6% 98.2%
3166029 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.73 41.0 5.21e-01 74.5% 98.2%
D2 medium residues 167-254
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.78 54.0 5.25e-01 71.6% 67.3%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 53.0 4.92e-01 77.3% 100.0%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 46.0 4.39e-01 73.9% 75.2%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 57.0 5.65e-01 96.6% 94.7%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 55.0 4.39e-01 93.2% 75.9%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 57.0 5.70e-01 97.7% 94.6%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 45.0 4.51e-01 73.9% 79.3%
3bqjA01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.63 44.0 3.40e-01 72.7% 45.6%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 44.0 4.24e-01 73.9% 76.9%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 54.0 4.13e-01 95.5% 52.2%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 47.0 3.91e-01 83.0% 70.8%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 53.0 5.21e-01 98.9% 96.8%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 42.0 3.91e-01 73.9% 59.8%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 42.0 4.28e-01 73.9% 81.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 4.61e-01 89.8% 83.3%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.57 49.0 3.30e-01 95.5% 36.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.87e-01 71.6% 94.8%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.44e-01 71.6% 86.6%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 4.20e-01 84.1% 81.4%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.55 39.0 3.11e-01 72.7% 67.2%
2qz5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 44.0 3.76e-01 88.6% 85.5%
2l0dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.81e-01 83.0% 71.1%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.53 41.0 3.55e-01 87.5% 98.7%
3phsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 4.32e-01 96.6% 89.0%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 4.05e-01 83.0% 93.4%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.52 36.0 3.22e-01 73.9% 50.7%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.52 37.0 2.90e-01 76.1% 68.6%
2mizA00 2.60.40.2900 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.08e-01 73.9% 85.3%
2fnqA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.52 41.0 3.88e-01 89.8% 79.6%
1yjdC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.70e-01 87.5% 86.4%
5dcaA08 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 39.0 3.66e-01 83.0% 83.6%
8bxrA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.91e-01 84.1% 90.8%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 38.0 3.34e-01 80.7% 93.2%
3w57A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 40.0 3.75e-01 88.6% 91.9%
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.63e-01 84.1% 78.4%
2q0zX03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 40.0 3.67e-01 86.4% 93.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602819 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.81 56.0 5.52e-01 71.6% 69.5%
3172159 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.79 56.0 5.11e-01 73.9% 67.8%
3617006 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 56.0 5.20e-01 73.9% 67.3%
3355171 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 55.0 4.90e-01 71.6% 77.5%
4627066 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.79 56.0 5.10e-01 73.9% 60.9%
3689991 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.79 56.0 4.96e-01 73.9% 60.2%
3726608 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 56.0 4.99e-01 73.9% 59.2%
3784709 1.1.7.44 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift 0.78 55.0 4.89e-01 73.9% 61.6%
3998042 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.78 55.0 5.14e-01 72.7% 68.6%
3268887 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 53.0 5.12e-01 71.6% 69.0%
3742214 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 53.0 4.97e-01 71.6% 67.6%
5078307 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.76 53.0 5.77e-01 72.7% 85.3%
4890345 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 51.0 5.20e-01 73.9% 72.9%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 49.0 4.85e-01 73.9% 64.2%
4162532 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 49.0 5.29e-01 73.9% 81.3%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 49.0 5.03e-01 73.9% 72.9%
4350337 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 48.0 5.16e-01 72.7% 81.3%
1688248 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.71 55.0 5.72e-01 87.5% 92.4%
4080130 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 48.0 5.16e-01 73.9% 82.7%
4166012 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 48.0 5.13e-01 73.9% 82.7%
4230122 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 48.0 4.66e-01 73.9% 63.0%
4083044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 47.0 5.03e-01 72.7% 81.3%
3964292 1.1.13.38 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.70 48.0 4.43e-01 72.7% 56.4%
4930890 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 49.0 5.27e-01 73.9% 90.7%
4466667 1.1.7.95 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.69 49.0 4.48e-01 73.9% 86.1%
4011239 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 47.0 4.93e-01 73.9% 77.5%
3904189 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 47.0 4.52e-01 73.9% 62.0%
4072484 1.1.8.7 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.68 56.0 5.61e-01 89.8% 87.8%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.68 47.0 4.59e-01 72.7% 71.0%
4050380 1.1.7.95 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 0.67 45.0 4.48e-01 70.5% 89.5%
4131100 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.67 47.0 4.14e-01 75.0% 65.9%
4538458 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.66 52.0 5.43e-01 86.4% 97.5%
3957622 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.66 54.0 5.57e-01 90.9% 96.4%
3967199 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 46.0 4.42e-01 73.9% 82.9%
3971757 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 47.0 4.24e-01 75.0% 87.5%
3971461 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 46.0 4.61e-01 73.9% 85.6%
3575535 1.1.7.113 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.65 55.0 3.41e-01 90.9% 48.6%
3166182 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.65 45.0 4.50e-01 72.7% 86.7%
3944005 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.64 47.0 4.15e-01 78.4% 66.9%
4944293 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 50.0 5.12e-01 96.6% 87.1%
4944289 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 49.0 5.09e-01 96.6% 90.0%
3664710 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.63 47.0 4.85e-01 78.4% 89.4%
4080655 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.63 57.0 5.56e-01 100.0% 96.8%
3946710 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 45.0 4.07e-01 75.0% 81.7%
3949068 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.62 45.0 3.90e-01 77.3% 80.0%
4042035 1.1.8.7 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel 0.60 48.0 4.80e-01 98.9% 88.8%
3815461 11.1.4.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PF30918 0.59 51.0 4.66e-01 97.7% 90.0%
3249211 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.58 44.0 4.43e-01 84.1% 85.6%
5052983 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 4.34e-01 83.0% 78.9%
3812521 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 49.0 4.62e-01 98.9% 93.6%
4979453 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.57 44.0 4.39e-01 83.0% 87.8%
3283730 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.56 44.0 4.55e-01 97.7% 89.4%
4134920 11.1.1.335 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.56 44.0 4.16e-01 85.2% 95.2%
3712933 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 44.0 3.82e-01 88.6% 86.9%
5078280 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.11e-01 83.0% 79.0%
4989773 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 40.0 4.13e-01 79.5% 83.7%
3282858 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.55e-01 75.0% 100.0%
3808258 11.1.4.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PF30918 0.53 45.0 4.16e-01 96.6% 84.2%
3283603 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.73e-01 70.5% 94.1%
5041035 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.88e-01 80.7% 88.0%
5039304 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.53 42.0 3.91e-01 85.2% 75.5%
5068960 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 46.0 4.42e-01 97.7% 88.0%
4999323 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 4.01e-01 85.2% 78.0%
5077839 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.76e-01 81.8% 76.4%
5055065 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 4.07e-01 78.4% 94.7%
4931565 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.66e-01 84.1% 94.8%
3717225 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 37.0 3.66e-01 80.7% 80.0%
3261442 11.1.4.70 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_1st 0.50 43.0 4.09e-01 95.5% 81.9%
3293003 11.2.1.17 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.50 44.0 3.64e-01 100.0% 73.9%