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ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00253
Bact-VirALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00253
Identity
- Kingdom:
- phage
Quality
50.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 242-355
D2
medium
residues 589-644
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18013.7 best | Phage_lysozyme2 | 59.1 | 7.90e-16 | 94.6% | 37.2% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bvsF03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 53.0 | 5.83e-01 | 91.1% | 88.9% |
| 2g8yA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.77 | 57.0 | 4.49e-01 | 96.4% | 38.9% |
| 6ukcA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.77 | 66.0 | 5.01e-01 | 96.4% | 42.1% |
| 1c3cA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.75 | 57.0 | 5.00e-01 | 94.6% | 55.6% |
| 6h9mA00 | 1.20.5.340 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 51.0 | 4.20e-01 | 75.0% | 42.6% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.71 | 57.0 | 5.20e-01 | 94.6% | 66.7% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.70 | 48.0 | 4.83e-01 | 92.9% | 71.4% |
| 3ci0K02 | 1.10.40.60 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › EpsJ-like | 0.68 | 62.0 | 4.83e-01 | 98.2% | 61.9% |
| 3on4D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.68 | 61.0 | 4.20e-01 | 100.0% | 30.8% |
| 2zcuA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.68 | 51.0 | 3.91e-01 | 94.6% | 38.3% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 49.0 | 5.31e-01 | 89.3% | 95.7% |
| 1yqgA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.64 | 55.0 | 4.35e-01 | 98.2% | 46.9% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 56.0 | 3.52e-01 | 98.2% | 43.4% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 55.0 | 3.46e-01 | 94.6% | 44.3% |
| 2ahrA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.63 | 52.0 | 4.28e-01 | 98.2% | 50.0% |
| 2q0yA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 49.0 | 3.69e-01 | 98.2% | 45.7% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 4.17e-01 | 91.1% | 77.8% |
| 1khcA02 | 1.10.720.50 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain | 0.51 | 35.0 | 3.34e-01 | 75.0% | 59.4% |
| 4qjbB01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.51 | 42.0 | 3.10e-01 | 96.4% | 42.5% |
| 3tl4X01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.50 | 40.0 | 3.40e-01 | 100.0% | 72.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3256442 | 3721.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 | 0.79 | 52.0 | 4.70e-01 | 96.4% | 50.7% |
| 4324088 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.75 | 53.0 | 5.44e-01 | 94.6% | 76.4% |
| 4969961 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.73 | 53.0 | 4.57e-01 | 76.8% | 76.5% |
| 3263704 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.72 | 61.0 | 5.98e-01 | 96.4% | 86.7% |
| 5068636 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.72 | 54.0 | 4.68e-01 | 96.4% | 52.9% |
| 3402257 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.71 | 61.0 | 3.96e-01 | 96.4% | 35.9% |
| 3491024 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.71 | 53.0 | 4.82e-01 | 94.6% | 60.0% |
| 4036926 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.71 | 58.0 | 5.27e-01 | 98.2% | 66.7% |
| 3735498 | 108.1.1.46 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Caleosin | 0.69 | 61.0 | 5.34e-01 | 96.4% | 76.2% |
| 3370877 | 108.1.1.46 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Caleosin | 0.68 | 59.0 | 4.27e-01 | 96.4% | 40.7% |
| 3754425 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.68 | 57.0 | 3.60e-01 | 96.4% | 29.3% |
| 4974048 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 60.0 | 3.85e-01 | 100.0% | 35.4% |
| 3653057 | 108.1.1.46 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Caleosin | 0.66 | 57.0 | 3.77e-01 | 96.4% | 26.2% |
| 4450994 | 108.1.1.46 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Caleosin | 0.66 | 56.0 | 4.45e-01 | 96.4% | 51.3% |
| 4069099 | 102.1.1.38 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N | 0.64 | 45.0 | 4.27e-01 | 94.6% | 61.4% |
| 3968899 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.64 | 56.0 | 4.60e-01 | 94.6% | 70.5% |
| 1208317 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.63 | 57.0 | 4.50e-01 | 100.0% | 63.7% |
| 4201640 | 142.1.1.8 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › PhyR_sigma2 | 0.60 | 52.0 | 4.70e-01 | 96.4% | 76.0% |
D3
medium
residues 763-912
Domain cluster:
rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05257.23 best | CHAP | 39.5 | 9.10e-10 | 54.7% | 87.6% |